Locus 3512

Sequence ID 2L_DroMel_CAF1
Location 10,257,967 – 10,258,058
Length 91
Max. P 0.500000
window5544

overview

Window 4

Location 10,257,967 – 10,258,058
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 93.41
Mean single sequence MFE -20.44
Consensus MFE -17.49
Energy contribution -17.60
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.86
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10257967 91 - 22407834
AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUACCAAAUAAAUGUGCUUGCUCUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAGAA
..((((((.(((((((....))))))).))))))....................((((((((((((...........))))))).))))). ( -21.10)
>DroSec_CAF1 3293 91 - 1
AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGACGAAAUGUGCUUGAUUUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAAAA
...(((((.(((((((....))))))).)))))((((.(((((.......((((..(((....)))..))))))))).))))......... ( -20.31)
>DroSim_CAF1 3310 91 - 1
AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGAAGAAAUGUGCUUGAUUUCCUUUCAGAUUUCAAUCGUUUUCGAGGCAGAAAA
..((((((.(((((((....))))))).))))))...((((((....((.((((..((......))..)))).)))))))).......... ( -19.90)
>consensus
AUAUUUCGAAGCAUUUUAAUAGAUGCUGCGAAAUUAACGAAGAAAUGUGCUUGAUUUCUUUUCAGAUUUCAAUCGUUUUUGAGGCAGAAAA
..((((((.(((((((....))))))).))))))...........(.(((((((..((......))..))).(((....))))))).)... (-17.49 = -17.60 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:13 2006