Locus 3511

Sequence ID 2L_DroMel_CAF1
Location 10,257,491 – 10,257,611
Length 120
Max. P 0.968270
window5543

overview

Window 3

Location 10,257,491 – 10,257,611
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -22.49
Consensus MFE -22.14
Energy contribution -21.92
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.14
Structure conservation index 0.98
SVM decision value 1.62
SVM RNA-class probability 0.968270
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10257491 120 + 22407834
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU
.((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80)
>DroSec_CAF1 2817 120 + 1
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU
.((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80)
>DroSim_CAF1 2834 120 + 1
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU
.((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... ( -23.80)
>DroEre_CAF1 2767 120 + 1
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAGUUCCUCUUUUGU
.((((((((...(((((((.(((((((((........)))))..)))).))))))).((((........))))))))))))..(((((((.............))))))).......... ( -22.02)
>DroYak_CAF1 2790 120 + 1
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAGUUCCUCUUUUGU
.((((((((...(((((((.(((((((((........)))))..)))).))))))).((((........))))))))))))..(((((((.............))))))).......... ( -22.02)
>DroAna_CAF1 1853 120 + 1
UUCAUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUGUGAUUAAAUCAGUGUUUUUAAUGGACGGUUGAUUAAAUAUAUGAUUUUUUUUUAUUUCCUCUUUUGU
.((((.(((...(((.(((.(((((((((........)))))..)))).))).)))...(((((.(((((.....))))).).))))..))).))))....................... ( -19.50)
>consensus
UUCGUUUAUACUUCGAGUGUCAGAGGUGAUAUGAACUUCACUAUUCUGCCAUUUGAUUAAAUCAGUUUUCUUAAUGGACGGUUGAUUAAAUAUAUGAUUUCGUUUUAUUUCCUCUUUUGU
.((((.(((...(((((((.(((((((((........)))))..)))).)))))))...(((((((..(((....)))..)))))))..))).))))....................... (-22.14 = -21.92 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:12 2006