Locus 3510

Sequence ID 2L_DroMel_CAF1
Location 10,256,889 – 10,257,006
Length 117
Max. P 0.500000
window5542

overview

Window 2

Location 10,256,889 – 10,257,006
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.03
Mean single sequence MFE -35.30
Consensus MFE -29.26
Energy contribution -30.30
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -1.27
Structure conservation index 0.83
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10256889 117 - 22407834
UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAAACGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCAU
..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).....((((....)))) ( -35.50)
>DroSec_CAF1 2206 117 - 1
UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCCU
..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).......(((...))). ( -33.70)
>DroSim_CAF1 2223 117 - 1
UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG---AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCCU
..((((((...((((......((((...(((((......)))))..)))).---.....))))...)))))).(((((((.((.(......).)).))))))).......(((...))). ( -33.70)
>DroEre_CAF1 2187 111 - 1
UAGCAG--ACAGGCUUACAGAGAUCCACUUCCUUUCACGGGGAACCGAUCG---GUUACAGCUGGGCUCUGCACACCUGUUUAGAAUUUAAUGUACAUAGGUGA----GUGGGAGCCCAU
......--...((((.((...((((...(((((......)))))..)))).---))...))))((((((..(.(((((((.((.(......).)).))))))).----)..).))))).. ( -36.60)
>DroYak_CAF1 2198 114 - 1
UAGCAG--ACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCGGUGGUUAUAGCUGGGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGA----GUGGGAGCCCAU
......--...((((..(((.((((...(((((......)))))..)))).))).....))))((((((..(.(((((((.((.(......).)).))))))).----)..).))))).. ( -37.00)
>consensus
UAGCAGAGACAGGCUUACACAGAUCCACUUCCUUUCACGGGGAACCGAUCG___AUUACAGCUGCGCUCUGCACAUCUGUUUAGAAUUUAAUGUACAUAGGUGAGUGAGUGGGAGCCCAU
..((((((...((((......((((...(((((......)))))..)))).........))))...)))))).(((((((.((.(......).)).))))))).....((((....)))) (-29.26 = -30.30 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:11 2006