| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,079,092 – 1,079,189 |
| Length | 97 |
| Max. P | 0.556630 |
| Location | 1,079,092 – 1,079,189 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.68 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -17.35 |
| Energy contribution | -17.10 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1079092 97 - 22407834 GUGGCACAACUCGUUGGAGUAACCAGAGAUGGCUGCAUUCACUUGGGAGACCAGGGAAUCACGCUGGUUCUGCAAGAAUAUUAUUUUUAGCAUAAAU (..((.((.(((..(((.....)))))).))))..).....(((((....)))))(((((.....)))))(((.((((......)))).)))..... ( -28.50) >DroSec_CAF1 1059 97 - 1 GUGGCACAACUCGUUGGAGUAACCAGAGAUGGCUGCAUUCACUUGGGAGACCAGGGAAUCUCUCUGGUUCUGCAAUAAUAUAAUUUUAGGUAUGAGU ........((((((((.((.(((((((((.....(.((((.(((((....))))))))))))))))))))).)))).((((........)))))))) ( -32.90) >DroSim_CAF1 1059 97 - 1 GUGGCACAACUCGUUGGAGUAACCAGAGAUGGCUGCAUUCACUUGGGAGACCAGGGAAUCACGCUGGUUCUGCAAUAAUAUAAUUUUAGGCAUGAGU (((.(...((((....))))...(((((..(((((.((((.(((((....))))))))))).)))..)))))................).))).... ( -28.70) >DroEre_CAF1 1060 95 - 1 GUGGCAUAACUCAUUGGAGUAACCAGAAAUGGCUGCAUUCACUUGGGACACCAGCGAAUCUCGCUGGUUCUGCAAAAAUUCAA--AUCAAUAUGAAU ...(((...((((.(((((((.(((....))).))).))))..))))..(((((((.....)))))))..)))....(((((.--.......))))) ( -28.70) >DroYak_CAF1 1060 97 - 1 GUGGCACAACUCAUUGGAAUAACCAGAAAUGGCUGCAUUUACUUGGGACACCAGUGAAUCUCGCUGGUUCUGCAAGAAUAUUAUUUUCAGUAUGAAU (..((.((..((..(((.....)))))..))))..).....(((((((.(((((((.....)))))))))).))))..................... ( -24.60) >DroAna_CAF1 1272 97 - 1 AUGACACAGCUCAUUCGAGUAACCACAAAUGGCGGCAUUGACUUGAGAAGCCAGAGAUUCUCGUUGGGCCUGCAACAAAUAUAUAAUCAGUAAAAAU .(((....((((....))))...........(((((.(..((..(((((........)))))))..)))).)).............)))........ ( -18.50) >consensus GUGGCACAACUCAUUGGAGUAACCAGAAAUGGCUGCAUUCACUUGGGAGACCAGGGAAUCUCGCUGGUUCUGCAAGAAUAUAAUUUUCAGUAUGAAU ...(((...((((.(((((((.(((....))).))).))))..))))..(((((.(.....).)))))..)))........................ (-17.35 = -17.10 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:41 2006