Locus 3504

Sequence ID	2L_DroMel_CAF1
Location	10,242,901 – 10,243,012
Length	111
Max. P	0.925375

overview

Window 4

Location	10,242,901 – 10,243,012
Length	111
Sequences	3
Columns	111
Reading direction	forward
Mean pairwise identity	90.12
Mean single sequence MFE	-49.83
Consensus MFE	-39.25
Energy contribution	-38.37
Covariance contribution	-0.88
Combinations/Pair	1.12
Mean z-score	-4.23
Structure conservation index	0.79
SVM decision value	1.17
SVM RNA-class probability	0.925375
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10242901 111 + 22407834
UCUGUGCCAGUGCUACGCGAAUCGGCGGCGGCGGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCUGCUGCUCACCGCGGUGGCGGUGGCAUUAUCGGGAAUC
...((((((.((((((.((...(((.((((((((((.((.(..(..(((((.....)))))..)..))).))))))))).).))))))))))).))))))........... ( -53.90)
>DroSec_CAF1 2386 102 + 1
UCUGUGCCAGUGCUGCGCGAAUCGGC------GGCUGGCUUUACUGAAUUUAUAUUGAAUUUGGUGAGCGAGCUGCUGC---CGACGGUGGCGGUGGCAUUAUCCGGAAUC
(((((((((.(((..(.((..(((((------(((.((((((((..(((((.....)))))..)))...))))))))))---))))))..))).))))).....))))... ( -47.30)
>DroSim_CAF1 2351 102 + 1
UCUGUGCCAGUGCUGCGCGAAUCGGC------GGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCCGCUGC---CGGCGGUGGCGGUGGCAUUAUCCGGAAUC
(((((((((.(((..(.((...((((------(((.(((((.((..(((((.....)))))..))....))))))))))---)).)))..))).))))).....))))... ( -48.30)
>consensus
UCUGUGCCAGUGCUGCGCGAAUCGGC______GGCUGGCUUUGCUGAAUUUAUAUUGAAUUUGGUGAGUGAGCUGCUGC___CGGCGGUGGCGGUGGCAUUAUCCGGAAUC
...((((((.((((((.((...((((......((((.((((.((..(((((.....)))))..)))))).)))))))).......)))))))).))))))........... (-39.25 = -38.37 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:03 2006