Locus 350

Sequence ID 2L_DroMel_CAF1
Location 1,074,279 – 1,074,378
Length 99
Max. P 0.724584
window554

overview

Window 4

Location 1,074,279 – 1,074,378
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -30.94
Consensus MFE -22.96
Energy contribution -23.16
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.74
SVM decision value 0.41
SVM RNA-class probability 0.724584
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1074279 99 - 22407834
AGAGUAGGAGCGAAAAGAAACUAAUAGGCCAGUAGUACGAAUCGCAGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA
.((((.(((((((...((((.......((((.(.((((...((((......))))...))))).))))..))))...)))..)))).))))........ ( -28.70)
>DroSec_CAF1 56596 99 - 1
AGAGUAGGAGCGAGAGGAAGGUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA
.((((.((((...((.....((((....(((.(.((((...(((((....)))))...))))).))).....)))).))...)))).))))........ ( -28.60)
>DroSim_CAF1 48395 99 - 1
AGAGUAGGAGCGAGAGGAAAGUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA
.((((.(((((((..(.(((((....(.(((.(.((((...(((((....)))))...))))).)))).))))).).)))..)))).))))........ ( -28.70)
>DroEre_CAF1 53737 99 - 1
AGAGUGGGAGCGAGACGAAGCCAAUAGAGAAGUAGUACGAUUCGCCGAGGAGUGAGGAGUGCGGUGGCAAUUUUGCAUCGAUCUCCCACUCAACGGGCA
.((((((((((((..((((((((...........((((..(((((......)))))..))))..))))...))))..)))..)))))))))........ ( -36.02)
>DroYak_CAF1 56633 99 - 1
CGAGUCGAAGCGAGACGAAACUAAUAGAGAAGUAGUACGAUUCGCUGAGGAGUGAGGAGUGCGGUGGCAAUUUUGCAUCGAUCUCCCACUCAACGGGCA
...(((..((((((.((..((((.........)))).)).))))))...(((((.((((..(((((.((....)))))))..)))))))))....))). ( -32.70)
>consensus
AGAGUAGGAGCGAGACGAAACUAAUAGACCAGUAGUACGAAUCGCUGAGGAGUGAGCAGUGCAGUGGCAAUUUUGCAUCGAUCUCCCACUCAAUGGGCA
.((((.(((((((.....................((((...((((......))))...))))....(((....))).)))..)))).))))........ (-22.96 = -23.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006