Locus 3498

Sequence ID 2L_DroMel_CAF1
Location 10,210,234 – 10,210,334
Length 100
Max. P 0.519276
window5524

overview

Window 4

Location 10,210,234 – 10,210,334
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -31.40
Consensus MFE -23.47
Energy contribution -22.95
Covariance contribution -0.52
Combinations/Pair 1.32
Mean z-score -1.38
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.519276
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10210234 100 + 22407834
UUGCUGCACGAUAGCUGGGGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUCAGCGAUGGCGUUGCGGAAU
...(((((((...((((((.(((.....((((((((((..(((((((.....)))))))..)))))).))))...))))))))).....)).)))))... ( -36.30)
>DroSec_CAF1 3387 100 + 1
UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAGCGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUGGCGUUGCGGAAU
...(((((((...(((.(.((((.....((((((((((..(((((((.....)))))))..)))))).))))...))))).))).....)).)))))... ( -33.10)
>DroSim_CAF1 3117 100 + 1
UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUGGCGUUGCGGAAU
...(((((((...(((.(.((((.....((((((((((..(((((((.....)))))))..)))))).))))...))))).))).....)).)))))... ( -33.10)
>DroEre_CAF1 3343 100 + 1
UUGUUGCACUACAGCCGGAGUUCCAGUUGAGAUGGUGGAUAGGUUGGAACGUCCAAUUUUCUCGCCGCUUUCCACAAACCGAGCGAUAUCAUUGCGGAAU
..((((.....))))....(((((.((.((((((((((..(((((((.....)))))))..)))))).)))).)).......(((((...)))))))))) ( -28.10)
>DroYak_CAF1 3155 100 + 1
UUGCUGCACUACAGCCGGAGUUCCAGUUGAAAUGGUGGAUAAGUUGGAACGUCCAAUUUUUUCGCCGCUUUCUACGAACCGAGCAAUAUCAUUGCGGAAU
..((((.....))))....(((((.((.(((((((((((.(((((((.....))))))).))))))).)))).)).......(((((...)))))))))) ( -32.70)
>DroAna_CAF1 3445 100 + 1
UUGUUGGGCUGGGGGAAGUGUUCCCGUGGAAAUCGUCGACAAAUUGGACCGUCCGAUUUUUUCCCCACUCUCCACAAAUUGUGCUAUAACGUUUCGGAAU
.....(((.(((((((((((((..(((....).))..))))((((((.....))))))))))))))))))(((......(((......)))....))).. ( -25.10)
>consensus
UUGCUGCACGAUAGCUGGUGUUCCACUUGAAAUGGUGGAUAGAUUGGAACGUCCGAUUUUCUCGCCACUUUCUACGAACUGAGCGAUAGCGUUGCGGAAU
..((((.....))))....(((((....((((((((((..(((((((.....)))))))..)))))).))))..........(((((...)))))))))) (-23.47 = -22.95 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:53 2006