Locus 3495

Sequence ID 2L_DroMel_CAF1
Location 10,204,559 – 10,204,655
Length 96
Max. P 0.778200
window5519

overview

Window 9

Location 10,204,559 – 10,204,655
Length 96
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 73.05
Mean single sequence MFE -17.04
Consensus MFE -4.24
Energy contribution -6.40
Covariance contribution 2.16
Combinations/Pair 1.33
Mean z-score -1.79
Structure conservation index 0.25
SVM decision value 0.55
SVM RNA-class probability 0.778200
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10204559 96 - 22407834
UCAU-UGUUCAUAGUGAAAGGGA---A-----CACAAAAGUGGCAUUUAAAAGUUAUUGUUGCGGAAUAAAAUAAUUAUAUCGUAUUAAUAACGUUUAAAUCAUA
((((-((....))))))......---.-----(((....)))(.(((((((.(((((((.(((((.((((.....)))).))))).))))))).))))))))... ( -19.10)
>DroSec_CAF1 118236 86 - 1
UAAU-UGUUAAUAGUGAAAGGGAA--A-----CACAAAAGUUGCA-----------UUGUUGCGGAGUAAAAUAAUUAUAUAGCAUUAAUAACGUUUAAAUCAUA
(((.-(((((.(((((....(...--.-----).......(((((-----------....)))))..................))))).))))).)))....... ( -11.90)
>DroSim_CAF1 124990 104 - 1
UAAU-UGUUAAUAGUGAAAGGGUGAAAUAGUGCACAAAAGUUGCAUUUAAAUGUUAUUGUUGCGGAGUAAAAUAAUUAUAUAGCAUUAAUAACGUUUAAAUCAUA
....-........(..(....(((........))).....)..)(((((((((((((((.(((...((((.....))))...))).))))))))))))))).... ( -21.00)
>DroEre_CAF1 120236 97 - 1
UAAU-UUCGGAUAGUAAAAAAGGA--A-----GACAAAAUAUGCAUUUAAAAGUUAUUAACGCGGAGUAAAAUAAUUAUUUCGCAUAAAUAGCGUUUAAAUAAGG
....-...................--.-----............(((((((.((((((...(((((((((.....)))))))))...)))))).))))))).... ( -16.60)
>DroYak_CAF1 120866 98 - 1
UAAUGCUUGGAUUGUAAAUUGGAA--G-----CACAAAAAAUGCAUUUAGGUGUUUUUAAAGCAGAAUAAAAUAAUUAUUUCACAUUAAUAGCAUUUAAGCCAGA
....((((((((.((...((((((--(-----(((..(((.....)))..)))))))))).(..((((((.....))))))..).......)))))))))).... ( -16.60)
>consensus
UAAU_UGUUAAUAGUGAAAGGGAA__A_____CACAAAAGUUGCAUUUAAAAGUUAUUGUUGCGGAGUAAAAUAAUUAUAUCGCAUUAAUAACGUUUAAAUCAUA
............................................(((((((.(((((((.(((...((((.....))))...))).))))))).))))))).... ( -4.24 =  -6.40 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006