Locus 3493

Sequence ID 2L_DroMel_CAF1
Location 10,196,412 – 10,196,502
Length 90
Max. P 0.652564
window5517

overview

Window 7

Location 10,196,412 – 10,196,502
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -20.28
Consensus MFE -15.22
Energy contribution -16.90
Covariance contribution 1.68
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.75
SVM decision value 0.25
SVM RNA-class probability 0.652564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10196412 90 - 22407834
AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCUA
...............((((......((((((....))))))(((((((((........))))))))).........)))).......... ( -20.60)
>DroSec_CAF1 110017 90 - 1
AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA
.((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). ( -21.70)
>DroSim_CAF1 116670 90 - 1
AUGUGUUUAUUUAAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA
.((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). ( -21.70)
>DroEre_CAF1 111740 90 - 1
AUGUGAUUAUUUCAAUGGCCAAAACGAAUUGAUUCAAAUGCUCCGCUUAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAGAAAUAGCAA
...((.(((((((..((((......(((....)))...(((.((((((........))).))).))).........))))))))))))). ( -17.60)
>DroYak_CAF1 112027 90 - 1
AUGUGAUUAUUUCAAUGGCUAAAACGUAUUUAUUUAAAAACCCCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAGAAAUCGCAA
.(((((((...((..(((((.....(((((((((.............)))))))))..((((...))))......)))))))))))))). ( -19.82)
>consensus
AUGUGUUUAUUUCAAUGGCCAAAACGUAUUUAUUUAAAUGCUGCGCUAAUAAAUGCAAGUUGGCGCAACAGAGGAAGCCAAAAAUCGCAA
.((((...((((...((((......((((((....))))))(((((((((........))))))))).........)))).)))))))). (-15.22 = -16.90 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:46 2006