Locus 3492

Sequence ID 2L_DroMel_CAF1
Location 10,194,920 – 10,195,016
Length 96
Max. P 0.550825
window5516

overview

Window 6

Location 10,194,920 – 10,195,016
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.61
Mean single sequence MFE -26.12
Consensus MFE -15.19
Energy contribution -16.13
Covariance contribution 0.95
Combinations/Pair 1.35
Mean z-score -1.43
Structure conservation index 0.58
SVM decision value 0.03
SVM RNA-class probability 0.550825
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10194920 96 + 22407834
AUGUUCCGAGUGUCCUCCGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGGUUAGGAAUGGAAA--AAAG--GAUUAUAUUAC--
........(((((..(((((((((..((((((......))))))..)))))).....(((.(((((.....))))).))).--...)--))..)))))..-- ( -25.80)
>DroVir_CAF1 193633 89 + 1
AUAUUGAGAGUGUCCUCCGUCAUGUGAUUCGUGAUUGCGCCAAUGUCACUG---AGGCCUG-UGCGGAG-AAGUCAAAA------UA--GAUUAGAAUUCAU
.......((((.((((((((((((.....)))))).((((....(((....---.)))..)-)))))))-.((((....------..--)))).)))))).. ( -20.20)
>DroSec_CAF1 108563 97 + 1
AUGUUCCGUGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA-AAGUAUAAAAAUAAAAA--GAUUAUAAUAC--
..(..(((.(((((...(((((((..((((((......))))))..)))))))))))).)))..)....-.................--...........-- ( -22.60)
>DroSim_CAF1 115168 96 + 1
AUGUUGCGGGUGUCCUCGGUCAUGUGGUUGGUUAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA-AGGUAUGUAAA-AAACA--UAUAAUAAUAC--
.(((((((((...(((((((((((..((((((......))))))..))))))))).....)).))))..-..((((((...-..)))--)))..))))).-- ( -26.30)
>DroEre_CAF1 110240 95 + 1
AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCGUGGCUGACAUUUGGUUCUGAA-AAGUAUCGAAA--AGAG--GUUAAUUAUGC--
.....((..((..(((((((((((..((((((......))))))..)))))))....((((((.((...-.)).)))))).--.)))--)...))..)).-- ( -28.30)
>DroYak_CAF1 110494 97 + 1
AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCCCACAUUUGGUUCUGAA-AAGUGUGGAGA--AGAGGAGUUAAUUCUAU--
......(((((.((((((((((((..((((((......))))))..)))))))(((((((.........-)))))))....--.)))))....)))))..-- ( -33.50)
>consensus
AUGUUCAGGGUGUCCUCGGUCAUGUGGUUGGUGAUGCUGCCAAUGUCAUGGCUGAUAUUUGGUUCUGAA_AAGUAUGGAAA__AAAA__GAUAAUAAUAC__
.......(((((((...(((((((..((((((......))))))..)))))))))))))).......................................... (-15.19 = -16.13 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006