| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,193,182 – 10,193,289 |
| Length | 107 |
| Max. P | 0.749880 |
| Location | 10,193,182 – 10,193,289 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -17.88 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10193182 107 - 22407834 UGGCAAGACAUCCUUGCUAUCGGCGCUUCUCAUGGAGAUGCCGCUCCUAGCAGGCAACAUGUUUUGGCAUAAGUGAGUAAACAUCUUAUAGUCUUCGGUUUUUUUUU ((.((((((((.(((((((.(((((((((....)))).)))))....)))))))....)))))))).))...(((((.......))))).................. ( -30.60) >DroVir_CAF1 189537 86 - 1 UGGCAAGACCUCCCUGCUAUCGGCUCUGCUCAUGGAGAUGCCACUGCUUGUGGGGAAUAUGUUUUGGCAUAAGUGAGUACAAGUUU--------------------- ((.((((((.((((..(....((((((.(....).))).))).......)..))))....)))))).)).................--------------------- ( -24.30) >DroSec_CAF1 106855 92 - 1 UGGCAAGACAUCCUUGCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCAUAAGUGAGUAAACAUCAUCUAAU--------------- ((.((((((((..(((((...((((((((....)))).))))((.....)).))))).)))))))).))((..(((.......)))..))..--------------- ( -30.60) >DroEre_CAF1 108478 102 - 1 UGGCAAGACUUCCCUUCUAUCGGCGCUCCUCAUGGAGAUGCCGCUUCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUGAACUGCUUAUAAUCUUCGCUCUU----- ((.((((((............((((((((....)))).))))((((.....)))).....)))))).)).....(((((((............)))))))..----- ( -29.90) >DroYak_CAF1 108710 102 - 1 UGGCAAGACAUCCCUUCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUAAACUUCUUACAGUCUUCGGUUUU----- ((.((((((((.(((......((((((((....)))).))))((.....)))))....)))))))).))...(((((.......))))).............----- ( -29.50) >DroAna_CAF1 117892 89 - 1 UGGAAAGACCUCUCUGCUGUCUGCUCUUCUCAUGGAGAUGCCUCUAUUGGCAGGCAAUAUGUUUUGGCACAAGUAAGUAGU-AUUUUAGG----------------- ........(((...(((((..((((((((....)))))((((......))))(.(((......))).)....)))..))))-)....)))----------------- ( -20.70) >consensus UGGCAAGACAUCCCUGCUAUCGGCGCUCCUCAUGGAGAUGCCGCUCCUCGCAGGCAACAUGUUUUGGCACAAGUGAGUAAACAUCUUAUA_U_______________ ((.((((((...(((((...(((((((((....)))).)))))......)))))......)))))).))...................................... (-17.88 = -18.63 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006