Locus 3489

Sequence ID 2L_DroMel_CAF1
Location 10,191,635 – 10,191,755
Length 120
Max. P 0.627519
window5512

overview

Window 2

Location 10,191,635 – 10,191,755
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.72
Mean single sequence MFE -38.58
Consensus MFE -19.66
Energy contribution -20.00
Covariance contribution 0.34
Combinations/Pair 1.60
Mean z-score -1.82
Structure conservation index 0.51
SVM decision value 0.19
SVM RNA-class probability 0.627519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10191635 120 + 22407834
AUAGCUCGAGCUAUGGCAAUUCGCUGCCUUUGUCCACCGGAGAUAUUAAUUCCGCGUUCCCCGAUAAUGGAAAGAUCCCCUCGGGGCAUUAGCUCAAUAUCCGGUUUCAGAGCACAGGCU
...(((((..(...((((......))))...)..)((((((((.......)).((...((((((....(((....)))..)))))).....))......))))))....))))....... ( -36.60)
>DroVir_CAF1 184358 120 + 1
AUUGCACGUGCAAUAGCGAUGCGCUGCCUCUGUCCGCCGGAUAGGUUGAUGCCGCGCUCACCGAUUAUCGUAAAAUCGCCGCUCGGCAUUAGUUCAAUAUCCGGCUUUAGUGCACACGCA
(((((....))))).(((.((((((((....))..((((((((..(((((((((.((....(((((.......)))))..)).))))))))).....))))))))...))))))..))). ( -45.20)
>DroGri_CAF1 159318 120 + 1
AUUGCACGUGCUAUCGCAAUCCGUUGCCGCUGUCCGCCUGACAGAUUGAUGCCUCGCUCACCGAUUAUCGUAAAAUCGGCUGUGGGCAUCAGUUCAAUAUCCGGUCUCAAUGCGCACGCA
......(((((....(((....(..(((((((((.....)))))(((((((((.(((...((((((.......))))))..))))))))))))........))))..)..)))))))).. ( -40.90)
>DroWil_CAF1 192035 120 + 1
AUUGCACGAGCUAUGGCAAUUCGUUGCCUUUGACCACCGGACAAAUUGAUGCCACGCUCACCGAUAAUGGUAAAAUCGCCAGUUGGCAUUAAUUCAAUAUCUGGCUUCAAUGCACAUGCA
..((((.(.((...(((((....))))).((((...(((((..(((((((((((.(((...((((.........))))..)))))))))))))).....)))))..)))).)).).)))) ( -34.10)
>DroAna_CAF1 116333 120 + 1
AAGGCCCGGGCAAUGGCGAUUCGUUGCCUUUGUCCCCCUGACAUGUUGAUUCCUCGUUCUCCGAUAAUCGUAUAAUCUCCGCGCGGCAUUAGCUCGAUGUCCAGCUUGAGGGCACAGGCU
...((((((((((.(((((....))))).))))))..(((((((((((((.((.(((.....(((.........)))...))).)).))))))...)))).))).....))))....... ( -36.10)
>DroPer_CAF1 88528 120 + 1
AUCGCACGCGCAAUAGCAAUUCGCUGUAUCUGUCCGCCUGAUAUAUUGAUGCCGCGCUCUCCGAUAAUGGUGAAAUCGCCUUUUGGCAUUAUUUCAAUGUCAGGCUUAAGGGCACAUGCU
.........((((((((.....)))))...((((((((((((((..(((((((.((.....)).....((((....))))....))))))).....)))))))))....)))))..))). ( -38.60)
>consensus
AUUGCACGAGCAAUGGCAAUUCGCUGCCUCUGUCCGCCGGACAUAUUGAUGCCGCGCUCACCGAUAAUCGUAAAAUCGCCUCUCGGCAUUAGUUCAAUAUCCGGCUUCAGUGCACACGCA
..((((.(.((....(((......)))........((((((...((((((((((.......((((.........)))).....))))))))))......))))))......)).).)))) (-19.66 = -20.00 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:41 2006