| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,190,250 – 10,190,369 |
| Length | 119 |
| Max. P | 0.542332 |
| Location | 10,190,250 – 10,190,369 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -42.48 |
| Consensus MFE | -27.30 |
| Energy contribution | -26.97 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10190250 119 + 22407834 AACCACCCAUGG-AGACGGCCACAUGGUUGCCCAUCACCUGGGCACAGAUCAUGGACAUGGCCUCGCAUUGCGUGGGAUUCACUUUGCCGGGCAUUAUGGAACUACCUGGUUCGUUCUCC ..........((-(((((((((((((((((((((.....))))))...))))))....)))))...((((((.(((.(.......).))).)))..)))(((((....)))))).))))) ( -40.50) >DroPse_CAF1 96203 119 + 1 AACCGCCUAAUG-UAACCGCUACUUGGUUGCCCAUGACCUGGGCACAGAUCAUGGUGAGAGCUUCGCACUGUGUCGGAUUGACUUUACCAGGCAUAAUCGAGCUACCCGGCUCAUUUUCG ....((((...(-((((((.....)))))))......((..(((((((.....(((....))).....)))))))))............))))......(((((....)))))....... ( -34.50) >DroSim_CAF1 111094 120 + 1 AACCACCCAUGGCAGACGGCCACAUGGUUGCCCAUCACCUGGGCGCAGAUCAUGGACAUGGCCUCACAUUGCGUGGGAUUUACUUUGCCGGGCAUGAUGGAACUACCUGGUUCGUUCUCC .....(((..((((((.(((((((((((((((((.....)))))...)))))))....)))))((((.....)))).......)))))))))...((..(((((....)))))..))... ( -39.50) >DroYak_CAF1 105442 119 + 1 AACCACCCAUGG-UGACGGCCACAUGGUUGCCCAUCACCUGGGCGCAGAUCAUGGACAUGGCCUCGCACUGCGUGGGAUUCACCUUGCCGGGCAUGAUUGAACUGCCUGGCUCGUUCUCC .....(((((((-(((.(((((((((((((((((.....)))))...)))))))....)))))))))....)))))).........((((((((.(......)))))))))......... ( -48.90) >DroAna_CAF1 114825 119 + 1 CGCCGCCAAUGC-UAAUGGCUGCAUCAUUGCCCAUGAUCUGGGCACAGAUCAUGGUCAUGGCCUCGCACUGGGUGGGAUUCACCUUCCCCGGCAUGAUCGAGCUGCCCGGCUCGUUCUCU .(((((((.(((-....(((((((....)))((((((((((....))))))))))....))))..))).)))..((((.......))))))))..((.((((((....)))))).))... ( -54.00) >DroPer_CAF1 86866 119 + 1 AACCGCCUAAUG-UAACCGCUACUUGGUUGCCCAUGACCUGGGCACAGAUCAUGGUGAGAGCUUCGCACUGUGUCGGAUUCACUUUGCCUGGCAUAAUCGAGCUUCCCGGCUCAUUUUCG ....(((....(-((((((.....)))))))((((((.(((....))).)))))).(..((((.((...((((((((...........))))))))..))))))..).)))......... ( -37.50) >consensus AACCACCCAUGG_UAACGGCCACAUGGUUGCCCAUCACCUGGGCACAGAUCAUGGACAUGGCCUCGCACUGCGUGGGAUUCACUUUGCCGGGCAUGAUCGAACUACCCGGCUCGUUCUCC .................((((.((((((((((((.....))))))...)))))).....))))..((...(((.((......)).)))...))......(((((....)))))....... (-27.30 = -26.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:40 2006