Locus 3487

Sequence ID 2L_DroMel_CAF1
Location 10,190,091 – 10,190,210
Length 119
Max. P 0.512230
window5510

overview

Window 0

Location 10,190,091 – 10,190,210
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.49
Mean single sequence MFE -38.45
Consensus MFE -24.79
Energy contribution -25.97
Covariance contribution 1.17
Combinations/Pair 1.31
Mean z-score -1.24
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.512230
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10190091 119 - 22407834
UGCCUCCAAUGUUUUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUUUGCACCAAUUGCCUCGAGGGCAUCGAGCCCAAUAGGAGCAAGAUUGGUAGCAUCGUCAAGGAGU
(((..(((..((((((((((((((....((((.(((((((.(((.(((....))))))....))))))).))))..)))))))((....)).))))))))))..)))............ ( -40.50)
>DroPse_CAF1 96044 119 - 1
UGCCUCAAAUGUGCUUCGCUCGAUAACACUUUUGGGAGACGGAAUUAAGUCUUUUUGCAAAAACUGCCUCAGCAACAUCGAACCAAACACAGACAAGAUAAAUACUAUCAUGAGUCAGU
((.((((..((((.((.(.(((((.....(((((((((((........))))))...)))))..(((....)))..))))).).)).)))).....((((.....)))).)))).)).. ( -22.90)
>DroSec_CAF1 103868 119 - 1
UGCCUCCAAUGUUCUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUCUGCACCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUGGUAGCAUCCUCAAGGAGU
(((..((((((((((.(((((((........)))))))..(((.(((.((((((..(((.....)))...)))))).))).))).....))))))...))))..)))(((....))).. ( -41.70)
>DroEre_CAF1 105003 119 - 1
AGCCUCCAAUGUUCUGCGCUCGAUUAACCUCUUGGGCGAUGGCAUGAAGUCCUUCUGCGUCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUAAGAGCAUCCUCAGGGAGU
...((((..((((((..(((((((...((((..(((((.((((..(((....)))...))))..))))).))))..)))))))......)))))).......(((....)))..)))). ( -40.30)
>DroYak_CAF1 105283 119 - 1
UGCCUCCAAUGUGCUGCGCUCGGUCACCCUGUUGGGCGAUGGCAUGAAGUCCUUCUGCGCCAACUGCCUCGAGGGCAUCGAGCCGAACAGGAGCAAGAUCAAGAGCAUCCUCAAGGAGU
...((((..((.(.(((.((.((((.(((((((.(((..((((..(((....)))...))))..((((.....))))....))).)))))).)...)))).)).))).)..)).)))). ( -41.50)
>DroAna_CAF1 114666 119 - 1
CGUCUCGAAUGUCCUGCGUUCGAUCACCCUUCUGGGCGAUGGCAUCAAUUCCUUCUGCGUGAACUGCCUGAAGGGUGCCGAACCGAACAAGGACAGAAUUGCCUCCAACAUGAUGGAGU
.........((((((..((((((((.(((....))).)))(((((.....(((((.(((....).))..))))))))))....))))).)))))).......(((((......))))). ( -43.80)
>consensus
UGCCUCCAAUGUUCUGCGCUCGAUUACACUUUUGGGCGAUGGCAUGAAGUCCUUCUGCACCAACUGCCUCGAGGGCAUCGAGCCCAACAGGAGCAAGAUUAAUAGCAUCCUCAAGGAGU
...((((..((((((.(((((((........)))))))..(((.(((.((((((..(((.....)))...)))))).))).))).....)))))).(((.......))).....)))). (-24.79 = -25.97 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:39 2006