Locus 3486

Sequence ID 2L_DroMel_CAF1
Location 10,186,576 – 10,186,696
Length 120
Max. P 0.548138
window5509

overview

Window 9

Location 10,186,576 – 10,186,696
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.78
Mean single sequence MFE -36.95
Consensus MFE -30.61
Energy contribution -31.53
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 0.03
SVM RNA-class probability 0.548138
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10186576 120 - 22407834
CGCAUGUACGCCGCCAUUUCGUGUGUUUGUAUAAUAAUGGCACUGGUAUCAACACCGGCCGGACAAUAUGCCGGCUGUAAUGCCCGUCGUAAUUUGCACGAUAAGCUGCUGCAAACGAUU
((..((((.((.((....(((((((....((..((...((((..(((......)))((((((.(.....)))))))....)))).))..))...)))))))...)).))))))..))... ( -35.00)
>DroVir_CAF1 175689 120 - 1
CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCACGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU
....(((.(((((((...((((((((.((((((((...((((.((....)).....((((........)))))))))))))))).))........)))))).....))))))).)))... ( -40.00)
>DroGri_CAF1 151690 120 - 1
CGGAUGUAUGCAACAAUAUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCGCGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU
....(((.(((((((.((((((((((.((((((((...((((.((....)).....((((........)))))))))))))))).))........))))))))...))))))).)))... ( -41.60)
>DroWil_CAF1 181710 120 - 1
CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCUGGCUGUAAUGCUCGUCGUAAUUUGCACGAUAAACUUUUGCAAACGAUU
....(((.(((((.....(((((((.((((.......(((((.((.......))..))))).......(((.(((......))).)))))))..))))))).......))))).)))... ( -30.50)
>DroMoj_CAF1 217240 120 - 1
CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGCAAAGCCAGCCGUAAUUUGCACGAUAAACUGUUGCUAACGAUU
....(((..((((((...(((((((.((((.......(((((.((.......))..))))).......(((.((((....)))).)))))))..))))))).....))))))..)))... ( -38.50)
>DroPer_CAF1 84203 120 - 1
UGCAUGUAUGCCGCAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCCCGUCGUAAUUUGCACGAUAAGCUGCUGCAAUCGAUU
....((((.((.((....(((((((.....((((..((((.((((....).(((((((((........)))))).))).))).))))..)))).)))))))...)).))))))....... ( -36.10)
>consensus
CGCAUGUAUGCAACAAUUUCGUGUGUUUGCAUUAUAAUGGCCAUGAUAUCAACACCGGCCGGACAAUGGGCCGGCUGUAAUGCCCGCCGUAAUUUGCACGAUAAACUGUUGCAAACGAUU
....(((.(((((((...(((((((.((((.......(((((.((.......))..))))).......(((.(((......))).)))))))..))))))).....))))))).)))... (-30.61 = -31.53 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:38 2006