| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,170,785 – 10,170,893 |
| Length | 108 |
| Max. P | 0.545911 |
| Location | 10,170,785 – 10,170,893 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.93 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -12.88 |
| Energy contribution | -15.30 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10170785 108 - 22407834 ----AGA---AUGCCUUUGUUUACCAAUGAAAUGGAAUCUCCCUUUUAUGGGCGAGCAG---UUUAUGUGUUUAUGUUUUAGACUUA-UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ----...---..............(((((((((((.....(((......)))(((((((---((...((((.((.(((...))).))-.)))).))))))))).))))))))))).... ( -32.40) >DroPse_CAF1 71091 98 - 1 AUACGAA---AUUCCUUUGUUUACAAAUGGAAUGGAAGCAUAUUUUUAUGGGCCAGCCCCCCCAUAUGUGCUUAGGUCUUCGACUUGAU------------------UCGUAUUGAUUU (((((((---(((((((((....)))).)))))..((((((((......(((....)))......))))))))(((((...)))))..)------------------))))))...... ( -27.50) >DroSec_CAF1 84518 111 - 1 ----GCCUUUUUUCCUUUGUUUACCAAUGAAAUGGAAUCUCCCUUUUAUGGGCGAGCAG---UUUAUGUGUUUAUGUUUUCGACUUA-UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ----....................(((((((((((.....(((......)))(((((((---((...((((.((.(((...))).))-.)))).))))))))).))))))))))).... ( -32.40) >DroSim_CAF1 88340 108 - 1 ----GGA---AUUCCUUUGUUUACCAAUGAAAUGGAAUCUCCCUUUUAUGGGCGAGCAG---UUUAUGUGUUUAUGUUUUCGACUUA-UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ----((.---...)).........(((((((((((.....(((......)))(((((((---((...((((.((.(((...))).))-.)))).))))))))).))))))))))).... ( -33.40) >DroEre_CAF1 85769 108 - 1 ----GGA---AUGCCUUUGUUUACCAAUGAAAUGGAAUCUCCCUUUUAUGGGCCAGCAG---UUUAUGUGUUUAUGUUUUCGACUUA-UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ----((.---...)).........(((((((((((.....(((......)))(.(((((---((...((((.((.(((...))).))-.)))).))))))).).))))))))))).... ( -28.80) >DroYak_CAF1 85684 108 - 1 ----GGA---AUGCCUUUGUUUGCGAAUGAAAUGGAAUCUCCCUUUUAUGGGCCAGCAG---UUUAUGUGUUUAUGUUUUCGACUUA-UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ----...---.(((........)))((((((((((.....(((......)))(.(((((---((...((((.((.(((...))).))-.)))).))))))).).))))))))))..... ( -26.30) >consensus ____GGA___AUGCCUUUGUUUACCAAUGAAAUGGAAUCUCCCUUUUAUGGGCCAGCAG___UUUAUGUGUUUAUGUUUUCGACUUA_UGCGCCAACUGCUUGACCAUUUUAUUGAUUU ........................(((((((((((.....(((......)))..(((((........((((....(((...))).....))))...)))))...))))))))))).... (-12.88 = -15.30 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:37 2006