| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,167,106 – 10,167,214 |
| Length | 108 |
| Max. P | 0.970913 |
| Location | 10,167,106 – 10,167,214 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.40 |
| Mean single sequence MFE | -30.65 |
| Consensus MFE | -14.75 |
| Energy contribution | -16.20 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.970913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10167106 108 - 22407834 -------GCAUUCAUGCCACUUUAAUUUGCUUUAGGCCAAUGCACACAUGCAACUUUAACUGUUGCACGCAAAGUUGUAGCUGGCUGGCUGGCAAAUUGGCGAUGGAUGGCA-AAC -------.(((((((((((.....(((((((...(((((.(((((.(.((((((.......)))))).)....).))))..)))))....))))))))))).)))))))...-... ( -36.20) >DroSec_CAF1 80862 107 - 1 -------GCAUUCAUGCCACUUUAAUUUGCUUUAGGCCAAUGCACACAUGCAACUUUAACUGUUGCACGCAAAGUAGUAGGCAACAUGC-AGCAAAUUGGCGAUGGAUGGCA-AAC -------.(((((((((((.....(((((((.((.(((..(((...(.((((((.......)))))).)....)))...)))....)).-))))))))))).)))))))...-... ( -32.10) >DroSim_CAF1 84697 101 - 1 -------GCAUUCAUGCCACUUUAAUUUGCUUUAGGCCAAUGCACACAUGCAACUUUAACUGUUGCACGCAAAGUAGUAG------UGC-AGCAAAUUGGCGAUGGAUGGCA-AAC -------.(((((((((((..((((.((((.....((....))......))))..)))).((((((((((......)).)------)))-))))...)))).)))))))...-... ( -29.20) >DroEre_CAF1 82178 97 - 1 GCAUGCAGCAUUCAUGGCGCUUUAAUUUGCUUUAAGCCAAUGCA--CAUGCAACUUAAACUGUUGCA----------------GCUGGCUGCCAAAUUGGCGAUGGAUGGCA-AAC ...(((..(((((((.((....(((((((.....(((((..((.--..((((((.......))))))----------------)))))))..))))))))).))))))))))-... ( -30.50) >DroYak_CAF1 82145 91 - 1 -------GCAUUCAUGGCGCUUUAAUUUGCUUUAAGCCACUGCA--CAUGCAACUUCAACUGUUGCA----------------GCUGGCUGGCAAAUUGGCGAUGGAUGGCGCAAC -------.(((((((.((....(((((((((...((((((((((--...(((........)))))))----------------).)))))))))))))))).)))))))....... ( -33.50) >DroAna_CAF1 86067 99 - 1 -------GCAUUCAUUAGGCUUUAAUACGGUUUAAGCCAAAGCA--AAUUAUACUUUAACUGUUGCUUGCAAAGACCCGGG---CAUUCAGCCGGAAUGGCAAC----GGCA-AAU -------((.....(((((((.......)))))))(((((((((--(.(((.....)))...))))))........((((.---.......))))..))))...----.)).-... ( -22.40) >consensus _______GCAUUCAUGCCACUUUAAUUUGCUUUAAGCCAAUGCA__CAUGCAACUUUAACUGUUGCACGCAAAGU_GUAG___GCUGGCUGGCAAAUUGGCGAUGGAUGGCA_AAC ........(((((((....(.((((((((((....((....)).....((((((.......)))))).......................)))))))))).))))))))....... (-14.75 = -16.20 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:35 2006