Locus 3483

Sequence ID 2L_DroMel_CAF1
Location 10,155,936 – 10,156,029
Length 93
Max. P 0.979487
window5506

overview

Window 6

Location 10,155,936 – 10,156,029
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 77.20
Mean single sequence MFE -22.44
Consensus MFE -11.26
Energy contribution -12.38
Covariance contribution 1.12
Combinations/Pair 1.29
Mean z-score -2.44
Structure conservation index 0.50
SVM decision value 1.84
SVM RNA-class probability 0.979487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10155936 93 + 22407834
GCGCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGUUCUAUUUAAGGACCUUUUACAAGGAUUGCUUAUGAAACU---AACU-ACAGUGCUAU
((((((((.((..(((((((((......((.((((((((......)))))))))).)))))))))..))..))).....---....-..)))))... ( -23.70)
>DroSec_CAF1 76980 82 + 1
GCGCUUAUUGUUUUCCCUGUGACCUAUUCGAGUCUUUAGUUAUACUUAACGACCUUUCACAAGGAUUGCUUUUGA---------------GUGCUAU
(((((((..((..(((.(((((.((.....))......((((....))))......))))).)))..))...)))---------------))))... ( -21.80)
>DroSim_CAF1 80769 82 + 1
GCUCUUAUUGUUUUCCCUGUGACCUAUUAGAGUCUUUAGUUAUAUUUAAGGACCUUUCACAAGGAUUGCUUAUGA---------------GUGCUAU
((.(((((.((..(((.(((((......((.((((((((......)))))))))).))))).)))..))..))))---------------).))... ( -25.50)
>DroEre_CAF1 78318 96 + 1
GGCCUUAUUGUUUCCCUUGUGACCUAUUAGAGUCUUUAGGUUUAUUUGCG-GCCCCUUAGAAGGAUUGCUUAUGAAACUGGAAACUGGCAAAGCAAC
.(((.....((((((((((.((((.....).)))..))))(((((..(((-(..(((....))).))))..)))))...)))))).)))........ ( -21.90)
>DroYak_CAF1 78375 86 + 1
GGUCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGGUAUAGUCAGGGAUCCUUUAGAAGGAUUGCUUAUGAAA-----------CAAAGCAAU
.............((((((..(((((..........))))).....))))))((((.....))))((((((......-----------..)))))). ( -19.30)
>consensus
GCGCUUAUUGUUUUCCUUGUGACCUAUUAGAGUCUUUAGUUAUAUUUAAGGACCUUUUACAAGGAUUGCUUAUGAAA___________CAGUGCUAU
.........((..(((((((((......((.((((((((......)))))))).)))))))))))..))............................ (-11.26 = -12.38 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:34 2006