Locus 3481

Sequence ID 2L_DroMel_CAF1
Location 10,152,034 – 10,152,142
Length 108
Max. P 0.506864
window5504

overview

Window 4

Location 10,152,034 – 10,152,142
Length 108
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 83.15
Mean single sequence MFE -25.62
Consensus MFE -14.34
Energy contribution -15.40
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.56
SVM decision value -0.05
SVM RNA-class probability 0.506864
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10152034 108 + 22407834
AAGGUGAAAAAUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUG--AAAAUCAGUAAUUGCGUUUGGCA---------UUCAAAUGCCCAGAAACUUGCAUUCACCGACAUUC
..((((((.......(((((......)))))..((.((((((((((((((--.....))))..))))))..((((---------(....)))))....)))).)).))))))....... ( -28.40)
>DroSec_CAF1 73052 119 + 1
AAAGUGAAAACUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUGGGAAAACCAAUAACUGCGUUUGGCAUUGAGUACAUUCAAAUGCCCAGAAACUUGCAGUCACUGACAUCC
..(((((....(((((((((.........((((........))))))))))))).........(((((((((((((((((....))).))))))...))))..)))))))))....... ( -31.10)
>DroSim_CAF1 76900 119 + 1
AAAGUUAAAACCUCCGAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUGGGAAAACCAAUAACUGCGUUUGGCAUCGAGUACAUUCAAAUGCCCAGAAACUUGCAUUCACUGACAUCC
...(((..........((((((........))))))(((.((((((.(((((....((((.........))))....(((....))).....)))))....))))))..)))))).... ( -21.90)
>DroEre_CAF1 74334 116 + 1
AAAGUAAUAACUUAUCAGUUGCAUUCAAUUGCACCUAGUUAUGCAAUCUG--AAAACAAGUAACUGGGCUUGACAUCGAGUACCUUCAAAUACCCAGA-ACUUCCAUUCACUGACAUCC
.((((....)))).(((((....((((((((((........)))))).))--))...((((..(((((((((....))))............))))).-))))......)))))..... ( -21.10)
>consensus
AAAGUGAAAACUUCCCAGUUACCUUCAAUUGUAGCUAGUUAUGCAAACUG__AAAACCAAUAACUGCGUUUGGCAUCGAGUACAUUCAAAUGCCCAGAAACUUGCAUUCACUGACAUCC
..(((((.........((((((........)))))).....(((((.((((..............((((((((............))))))))))))....))))).)))))....... (-14.34 = -15.40 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:33 2006