Locus 348

Sequence ID 2L_DroMel_CAF1
Location 1,071,177 – 1,071,278
Length 101
Max. P 0.773229
window552

overview

Window 2

Location 1,071,177 – 1,071,278
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 90.77
Mean single sequence MFE -22.48
Consensus MFE -18.42
Energy contribution -18.50
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.55
Structure conservation index 0.82
SVM decision value 0.54
SVM RNA-class probability 0.773229
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1071177 101 - 22407834
GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGGAACAGUGGCGUAGGCGGUGGGGUAA------GAUCAGGGGUA-AGAUAA
...((((.............((....)).((((((..(((.............((((....)))).((....)).)))..).))------)))....))))-...... ( -20.30)
>DroSec_CAF1 53458 102 - 1
GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGCAACAGUGGCGUAGGCGGUGGGGUAA------GAUCAGGGGUAAAGAUAA
...((((.............((....)).((((((..(((.............((((....)))).((....)).)))..).))------)))....))))....... ( -21.30)
>DroSim_CAF1 45297 102 - 1
GGAUACCGGGCGAAAUACAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGGAACAGUGGCGUAGGCGGUGGGGUAA------AAUCAGGGGUAAAGAUAA
.....((.(.((...(((.(((.((((....))))..................((((....))))))))))..)).).))....------.................. ( -21.00)
>DroEre_CAF1 50630 100 - 1
GGAUAGCAGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAAACAGUGGCGUAGGCAGUGGGC-AU------UUUCAGGGGUA-AAAUAA
.....((.(((........))).((((....)))).))((..(((((((....((((....)))).((.((.....)).))-))------)))).)..)).-...... ( -22.40)
>DroYak_CAF1 53469 106 - 1
GGAUACCAGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAACCAGUGGCGUAGGCAGUGGGG-AUUGGGGAUUUCAGGGGUA-AGAUAA
...((((.(((........)))....(((((((((((..(.((..........((((....)))).((....)).))..).-.)))))))))))...))))-...... ( -27.40)
>consensus
GGAUACCGGGCGAAAUAAAGUCGGAAGAAGUCUUCAGCACAACGAAAAUAAAAGCUGGAAACAGUGGCGUAGGCGGUGGGGUAA______GAUCAGGGGUA_AGAUAA
...((((.(((........))).((((....))))..(((.............((((....)))).((....)).))).))))......................... (-18.42 = -18.50 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:38 2006