| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,100,018 – 10,100,135 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 10,100,018 – 10,100,135 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -20.92 |
| Energy contribution | -20.36 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10100018 117 - 22407834 AUCGCUUUCUGUUUAACUAUAAUUUUCUGAGUGCACAUCGCCUCGCCGAAUGAGGAAGUAAACAAUAAAAAGGUUUUCAAGUAAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG ...((((..((((((.((...((((..((((.((.....))))))..)))).))....)))))).....(((((.((((((((......))))))))...)))))..))))...... ( -25.80) >DroSec_CAF1 26502 117 - 1 AUCGUUUUCUGUUUAACUAUAAUUUUCUGAGUGCACAUUGGCUCGCCGAAUGAGGAGGUAAACAAUAAAAAGGUUUUCAAGUAAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG ...((.(((...................))).))....(((((.((...((((((.(.....).........((.((((((((......)))))))).)).))))))..))))))). ( -23.21) >DroSim_CAF1 27196 117 - 1 AUCGUUUUCUGUUUAACUAUAAUUUUCUGAGUGCACAUUGCCCCGCCGAAUGAGGAGGUAAACAAUAAAAAGGUUUUCAAGUAAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG ..........................(((..(((.(((((((((.........)).)))))........(((((.((((((((......))))))))...))))).)).)))..))) ( -23.20) >DroEre_CAF1 25127 112 - 1 -----GUUCUGUUUAACUAUAAUUUUCUGAGUGCACAUUGCCUCGGCGAAUAAGGAAGUAAACAAUAAAAAGGUUUUCAAGUGAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG -----((((((((((......((((.(((((.((.....))))))).)))).......)))))).....(((((.((((((((......))))))))...)))))..))))...... ( -26.62) >DroYak_CAF1 26604 117 - 1 AUCGCUUUCUGCUUAACUAUAAUUUUCUGAGUGCUCAUUGCCCCGGCGAAUAAGGAAGUAAACAAUGAAAAGGUUUUCAAGUGAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG ...((.....))..............(((..(((((.((((....))))((((((..(....).........((.((((((((......)))))))).)).)))))))))))..))) ( -26.10) >consensus AUCGCUUUCUGUUUAACUAUAAUUUUCUGAGUGCACAUUGCCUCGCCGAAUGAGGAAGUAAACAAUAAAAAGGUUUUCAAGUAAAUCAAUAUUUGAAUACACCUUAUGAGCAGCCAG ........(((((((......(((((((..(....).((((....))))...)))))))..........(((((.((((((((......))))))))...))))).))))))).... (-20.92 = -20.36 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:15 2006