Locus 347

Sequence ID 2L_DroMel_CAF1
Location 1,065,800 – 1,065,909
Length 109
Max. P 0.530176
window551

overview

Window 1

Location 1,065,800 – 1,065,909
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 89.76
Mean single sequence MFE -35.48
Consensus MFE -25.27
Energy contribution -28.03
Covariance contribution 2.75
Combinations/Pair 1.06
Mean z-score -1.64
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.530176
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1065800 109 - 22407834
UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCUUGGAACUUCCCGGGUCCCAGUGGCAAGUGUACUGUAGAAGUCGA
.((((..((....))...))))((((((((..((..(((..(.(((((.(((((((......)))(((......))))).)).))))))..)))...))..)))))))) ( -29.10)
>DroSec_CAF1 48021 109 - 1
UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUGGAAGACGA
.((((..((....))...)))).......((((.(((((.(((.((((((((..(((.((..((((((......)))))).))))))))))))).))))))))..)))) ( -44.70)
>DroSim_CAF1 39889 109 - 1
UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGCAGAAGACGA
.((((..((....))...)))).......((((......((((.((((((((..(((.((..((((((......)))))).))))))))))))).))))......)))) ( -39.30)
>DroEre_CAF1 45143 97 - 1
UUCGAAAGGAAUUCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGGACUUCC-------CAGUGCCAAGUGU-----AUAAGACGA
..((((((..(.((......)).)..))))))............((((((((..((......))(((((....))-------))).)))))))).-----......... ( -28.80)
>consensus
UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUAGAAGACGA
.((((..((....))...)))).......((((......((((.((((((((..(((.(...((((((......))))))..)))))))))))).))))......)))) (-25.27 = -28.03 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:37 2006