Locus 3468

Sequence ID 2L_DroMel_CAF1
Location 10,087,888 – 10,087,985
Length 97
Max. P 0.751355
window5482

overview

Window 2

Location 10,087,888 – 10,087,985
Length 97
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 82.73
Mean single sequence MFE -43.38
Consensus MFE -34.03
Energy contribution -33.90
Covariance contribution -0.13
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.78
SVM decision value 0.48
SVM RNA-class probability 0.751355
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10087888 97 - 22407834
UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGU---------UCAGGGUGACCAGGACAAUGCA----------GGAC
.((((((((((...((((..((.........))..)))).)))).))).((.((((((....)))))).((---------((.((....)).))))...)).----------))). ( -41.50)
>DroSec_CAF1 14517 106 - 1
UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGU---------CCAGGGCUACCAGGACAAUGCAGGACA-UCCAGGAC
....(((((((...((((..((.........))..)))).)))).))).((.((((((....)))))).((---------((.((....)).))))...)).((...-.))..... ( -42.80)
>DroEre_CAF1 13329 106 - 1
UUUCGGCGGGCAAUGCAGUGGCAUUAGUGAAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGUCCAGGACGA---------CCGGGGCGACCAGGACAAUGCAGGACA-UACAGGAC
.((((((((((...((((..((.........))..)))).)))).))).((.((((((.(((((.((....---------)).))))).))))))....)).)))..-........ ( -44.00)
>DroYak_CAF1 14498 116 - 1
UUGCGCCGGGCCAUGCAGUGGCAUUAGUGGUGCUGCUGCGGCUUAGCCAGCUUCCUGGACAACCAGGACAACUAGGACAACUAGGACGACCAGGACAAUGCUGAACAAUGCCGGAC
..((((..((((..((((..((((.....))))..))))))))..))((((.((((((....))))))...((((.....))))...............))))......))..... ( -45.20)
>consensus
UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGA_________CCAGGGCGACCAGGACAAUGCAGGACA_U_CAGGAC
....(((((((...((((..((.........))..)))).)))).))).((.((((((....))))))............((.((....)).)).....))............... (-34.03 = -33.90 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006