Locus 3465

Sequence ID 2L_DroMel_CAF1
Location 10,077,015 – 10,077,117
Length 102
Max. P 0.717095
window5477

overview

Window 7

Location 10,077,015 – 10,077,117
Length 102
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 77.67
Mean single sequence MFE -24.07
Consensus MFE -17.91
Energy contribution -18.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.74
SVM decision value 0.39
SVM RNA-class probability 0.717095
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10077015 102 - 22407834
CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGACUUCGUCCUGGCUUCGUCCUGGUUUCGUCCUGCCUUCCCCCUCU-CUCUCUCCCUCUCUCAUCCCCAC
..(((......(((....))).((.((((((((((......((.((......)).))..))))))))))..))......-.............)))....... ( -27.00)
>DroSec_CAF1 3796 92 - 1
CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUGGUUUCGUCUUGGU---------CAUCCCCUCGCUUC--UCUCCCACUCACAUCGCCAC
...........(((....))).((((((((((((....))))))).....((...((.---------.....))..))...--.............))))).. ( -24.20)
>DroSim_CAF1 3791 83 - 1
CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUG-----------GU---------CAUUCCCUCGCUCCUCUCUCUCUCUCACAUCGCCAC
...........(((....))).((((((((((((....)))))))-----------((---------.........))..................))))).. ( -21.00)
>consensus
CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUGG_UUCGUC_UGGU_________CAUUCCCUCGCU_CUCUCUCCCUCUCACAUCGCCAC
...........(((....))).((((((((((((....)))))))..........((..............)).......................))))).. (-17.91 = -18.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006