Locus 3463

Sequence ID 2L_DroMel_CAF1
Location 10,072,871 – 10,072,972
Length 101
Max. P 0.714112
window5473

overview

Window 3

Location 10,072,871 – 10,072,972
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 80.10
Mean single sequence MFE -24.22
Consensus MFE -8.58
Energy contribution -11.18
Covariance contribution 2.60
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.35
SVM decision value 0.38
SVM RNA-class probability 0.714112
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10072871 101 - 22407834
CAUCAGUGUUUUGCGGCCCUAUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGAAGAAAUAAGGGGAAAGCGAGAAAGGGAACAAGAGAAAAGGGAACCA
..((....((((((..((((.........(((((((....)))))))........(....)..))))...))))))....))................... ( -24.00)
>DroSec_CAF1 8048 100 - 1
CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGGAGAAAUGAAA-AAAAGGGAGUAAGGAAACAAGCGAAAUGGGAACCA
..((..((((((((..((((((.......(((((((....)))))))........(....)....-.)))))).....(....)..)))))))).)).... ( -26.50)
>DroSim_CAF1 8058 100 - 1
CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGCGAGAAAUGAAA-AAAAGGGCGUAAGGAAACAAGCGAAAUGGGAACCA
..((..((((((((.(((((((.......(((((((....)))))))........(....)....-.)))))))....(....)..)))))))).)).... ( -30.30)
>DroEre_CAF1 7938 92 - 1
CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAG---GCUGCACUGGGAGAAAAAA------UACCAGAAAAGGAACAAGAGAACAGGGAAUCA
..((..((((((((((((.((((((........)))))).)---))))).((((.........------..))))............))))))..)).... ( -24.50)
>DroYak_CAF1 8146 94 - 1
CAUCUCAGUUUUGCGGCGCUUUAACACAAAGCCUUUGAGUC---ACUGCACUGGGAGAAAAAG-GG---GAGCAAAAAAGGAACAAGUGAAAAGGGAACCA
..(((...((((((...(((((.....)))))((((.(((.---.....))).))))......-..---..))))))..)))................... ( -15.80)
>consensus
CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGGAGAAAUAA_A__AAAGGGAGAAAGGGAACAAGAGAAAAGGGAACCA
..(((((((((((........))))))..(((((((....)))))))..)))))............................................... ( -8.58 = -11.18 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:02 2006