Locus 3462

Sequence ID 2L_DroMel_CAF1
Location 10,069,238 – 10,069,340
Length 102
Max. P 0.789759
window5472

overview

Window 2

Location 10,069,238 – 10,069,340
Length 102
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.33
Mean single sequence MFE -44.10
Consensus MFE -21.34
Energy contribution -21.28
Covariance contribution -0.05
Combinations/Pair 1.25
Mean z-score -1.97
Structure conservation index 0.48
SVM decision value 0.58
SVM RNA-class probability 0.789759
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10069238 102 + 22407834
AUGAUGCUGCAGAUUAGCGGGGCGGCGACGGCGAAGAGGAGCGGCAGAAGCCAACUGAUGCCGAUGGCGCCACGCAUUCCCGC--------CGUCGAACUGGGCGGCGGG-------
..((((((((......))).((((.((.(((((...((....(((....)))..))..))))).)).))))..)))))(((((--------((((......)))))))))------- ( -47.10)
>DroPse_CAF1 3983 106 + 1
AUGAUGCUGCAGAUUAGUGGGGCGGCAACUGCGAAGAGAAGCGGCAGCAGCCAGCUAAUGCCAAUGGCGCCACGUAUACCCGC--------CGCU---CCGCCCUGCAGAGACGAAU
......((((((....((((((((((....((........))((((((.....)))...(((...))))))..........))--------))))---)))).))))))........ ( -42.90)
>DroGri_CAF1 9428 106 + 1
AUGAUGCUGCAGAUGAGAGGCGCAGCAAUCGCAAACAGCAGCGGCAGCAGCCAACUAAUGCCAAUGGCUCCGCGUAUACCCGC--------UGAG---CCGCUCUGAAGGGCUAAGG
..((((((((...(....)..))))).)))((...(((.(((((((..((....))..))))...(((((.(((......)))--------.)))---))))))))....))..... ( -40.10)
>DroWil_CAF1 7813 110 + 1
AUGAUGCUGCAGAUUAGUGGGGCGGCAAUGGCAAAGAGUAGCGGCAGAAGCCAACUGAUGCCAAUGGCGCCACGUAUGCCAGCUUUGCUGCCCUGAAGCGAUGCGGCAGA-------
....(((((((......((((((((((((((((....((.(((((....))).......(((...))))).))...)))))...)))))))))))......)))))))..------- ( -48.50)
>DroAna_CAF1 4158 99 + 1
AUGAUGCUGCAGAUUAGUGGGGCGGCCACCGCGAAGAGCAGGGGCAGCAGCCAGCUGAUGCCGAUGGCGCCGCGGAUGCCCGC--------CG---AUCCGGUUGGCAGG-------
......((((.(((..(...(((((.(((((((..(..((..((((.(((....))).))))..)).)..))))).)).))))--------).---..)..))).)))).------- ( -43.10)
>DroPer_CAF1 3959 106 + 1
AUGAUGCUGCAGAUUAGUGGGGCGGCAACUGCGAAGAGGAGCGGCAGCAGCCAGCUAAUGCCAAUGGCGCCACGUAUACCCGC--------CGCU---CCGCCCUGCAGAGACGAAU
......((((((....((((((((((....((........))((((((.....)))...(((...))))))..........))--------))))---)))).))))))........ ( -42.90)
>consensus
AUGAUGCUGCAGAUUAGUGGGGCGGCAACCGCGAAGAGCAGCGGCAGCAGCCAACUAAUGCCAAUGGCGCCACGUAUACCCGC________CGCG___CCGCCCGGCAGA_______
......((((......((((.((.((....))..........((((..((....))..))))....)).))))..................((......))....))))........ (-21.34 = -21.28 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:01 2006