Locus 3461

Sequence ID 2L_DroMel_CAF1
Location 10,068,925 – 10,069,017
Length 92
Max. P 0.806486
window5471

overview

Window 1

Location 10,068,925 – 10,069,017
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.55
Mean single sequence MFE -30.37
Consensus MFE -23.92
Energy contribution -24.72
Covariance contribution 0.79
Combinations/Pair 1.08
Mean z-score -1.97
Structure conservation index 0.79
SVM decision value 0.63
SVM RNA-class probability 0.806486
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10068925 92 - 22407834
CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUUGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU
...------.((((((((.....((.((.(((((((((((((......)))))))))).)))))..((((.....))))..))..))))))))..... ( -31.70)
>DroSec_CAF1 4074 92 - 1
CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU
...------.((((((((.....((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..))..))))))))..... ( -30.20)
>DroSim_CAF1 4085 92 - 1
CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU
...------.((((((((.....((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..))..))))))))..... ( -30.20)
>DroEre_CAF1 4019 92 - 1
CAC------CAUCCACUGCUCAGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACGGGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU
...------.((((((((...........((((((((((((((...))).)))))))).)))((..((((.....))))..))..))))))))..... ( -30.20)
>DroWil_CAF1 7520 75 - 1
UAU------CAUCAA------------UGGGCGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAGCCAGCAGCGGCGGCAGUUACA-UGGAUG----
...------((((.(------------((((((((((((((((...))).)))))))).......(((.((....))))).))).))-).))))---- ( -23.80)
>DroYak_CAF1 4050 98 - 1
CAUCCACCGCAUCCACUGCUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACGAGCAUUGAAAGUGCAAGCAGCAGUGGAUUCAGU
........(.((((((((((...((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..)))))))))))).)... ( -36.10)
>consensus
CAU______CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU
..........((((((((...........((((((((((((((...))).)))))))).)))....((((.....))))......))))))))..... (-23.92 = -24.72 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:00 2006