| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,057,023 – 10,057,116 |
| Length | 93 |
| Max. P | 0.902852 |
| Location | 10,057,023 – 10,057,116 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.34 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -16.61 |
| Energy contribution | -16.17 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10057023 93 - 22407834 CCUAACGAAACGCGAGCACGAGAAU-UUGUCGAGCGUGUUAGCACGCUGAAUGUGUCGGUGAAACUGUA-------G---ACAAACGUAGACAGUACUCUCGUA .........(((.((((((..((..-...((.((((((....)))))))).....)).)))..(((((.-------.---((....))..))))).))).))). ( -27.40) >DroSec_CAF1 51815 90 - 1 CCUAACGAAAGGCGAGCACGAGAAU-UUAUCGAGCGUGUUAGCACGCUGAAUGAGCUGGUGAAACUGUA-------G---GCAAACGUAGACAG---UCUUGUA .....(....)((((((((.((...-((((..((((((....))))))..)))).)).)))..(((((.-------.---((....))..))))---)))))). ( -28.30) >DroSim_CAF1 55160 90 - 1 CCUAACGAAAGGCGAGCACGAGAAU-UUGUCGAGCGUGUUAGCACGCUGAAUGAGCUGGUGAAACUGUA-------G---ACAAACGUAGACAG---UCUCGUA .....(....)((((((((.((...-...((.((((((....)))))))).....)).)))..(((((.-------.---((....))..))))---)))))). ( -29.80) >DroEre_CAF1 53548 93 - 1 -UUUACGAGAGGCGAGCACGAGAAC-UUAUCGAGCGUGUUAGCACGCUGAAUGUGCCGAUGGAACUGUG---CUGUG---ACAAACGUAGAGAA---UCUCGAA -....(((((..((.((((((....-...)).((((((....))))))....))))))......((.((---(.((.---....))))).))..---))))).. ( -28.10) >DroYak_CAF1 53752 94 - 1 CCUUAGGAAAGAUAAGCACGAGAAU-UUGUCAAGCGUGUUAGCACGCUGAAUGUGCCGAUAGAACUGUG---CUGUG---GCAAACGUAGACAA---UCUCGAA .((((.......))))..(((((..-(((((.((((((....)))))).....((((.((((.......---)))))---)))......)))))---))))).. ( -29.00) >DroAna_CAF1 52316 99 - 1 UGGUACCAAAAACACGGACAGGAAUUUUGUUAGGUGUGUUAACA--AUGAAAGCACCGAUUGAACUGGGACUCUGUGAACCCAAACGACAACGA---UAAUGAA ..((.((........)))).......(((((.(((((.......--......)))))........((((..........))))...)))))...---....... ( -14.02) >consensus CCUAACGAAAGGCGAGCACGAGAAU_UUGUCGAGCGUGUUAGCACGCUGAAUGUGCCGAUGAAACUGUA_______G___ACAAACGUAGACAA___UCUCGAA ..................(((((...(((((.((((((....)))))).................(((............)))......)))))...))))).. (-16.61 = -16.17 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:54 2006