Locus 3453

Sequence ID 2L_DroMel_CAF1
Location 10,052,242 – 10,052,346
Length 104
Max. P 0.609842
window5462

overview

Window 2

Location 10,052,242 – 10,052,346
Length 104
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -35.22
Consensus MFE -25.94
Energy contribution -25.74
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.609842
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10052242 104 - 22407834
AUCCGCACUCGGCUUUUUAAUUAAUUUAGACAGGUACGUCGACUGUCGGUGGGGGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG
.(((((.(((.....((((((((.....(((((.........)))))...(((((((....((((.......))))...))))))))))))))))))------------))))).. ( -33.40)
>DroSec_CAF1 47244 102 - 1
AUCUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG
.(((((.(((.(((((((((.....))))).))))..((((..((((((.(--((((.......))).)).)))))).)))).(((.....))))))------------))))).. ( -29.90)
>DroSim_CAF1 50443 102 - 1
AUCUGCACUCGUCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG
.(((((((..((((.............))))..))))((((..((((((.(--((((.......))).)).)))))).))))(((((......))))------------).))).. ( -31.82)
>DroEre_CAF1 48716 114 - 1
AUUUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGAG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAGGCAUCGCGGGAGGCGGAAA
.(((((..((.((..(((((.....)))))..(((((((((..((((((((--((((.......))).))))))))).))))((((.....))))..))))))).))..))))).. ( -40.70)
>DroYak_CAF1 48763 114 - 1
AUUUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGAG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAGGCAUCGCGGCAGGCGGAAU
.(((((.(((.((..(((((.....)))))..(((((((((..((((((((--((((.......))).))))))))).))))((((.....))))..))))))).).))))))).. ( -40.30)
>consensus
AUCUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG__GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG____________GCGGAAG
.(((((..((((((..((((((......(((((.(.....).)))))......)))))).)))).........(....))).((((.....))))..............))))).. (-25.94 = -25.74 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:51 2006