| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,050,025 – 10,050,145 |
| Length | 120 |
| Max. P | 0.831380 |
| Location | 10,050,025 – 10,050,145 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.33 |
| Mean single sequence MFE | -50.14 |
| Consensus MFE | -39.22 |
| Energy contribution | -39.54 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10050025 120 - 22407834 GUUAGCAGGUUUGGAUGGCGUUCCUGCAGAACUAUGGAGGCGGCAUGGAAUUUGGCCAGCAUUUCCAGUGUCAGCUCGGUGUGUGCCAUGUCCAGCUGCUUCACGCGAUCCGCAUUGACG (((((...((..((((.((((((.....))))....((((((((.((((...((((..((((..(((((....))).)).))))))))..))))))))))))..)).)))))).))))). ( -46.90) >DroSec_CAF1 45745 108 - 1 ------------GGAUGGCACUCCUGCAGGACUAUGGAGGCGGCAUGGAACUUGGCCAGCAUUUCCAGAGUCAGCUUAGUGUGUGCCAUGUCCAGCUGCUUCACGCGGUCCGCAUUGACG ------------(((......)))(((.((((..((((((((((.((((...((((..(((((....(((....))))))))..))))..)))))))))))).))..)))))))...... ( -44.20) >DroSim_CAF1 48139 120 - 1 GUUAGCAGGUUGGGAUGGCGCUCCUGCAGGACUAUGGAGGCGGCAUGGAACUUGGCCAGCAUUUCCAGUGUCAGCUUGGUGUGUGCCAUGUCCAGCUGCUUCACGCGGUCCGCAUUGACG (((((((((..(.(....).).))))).((((..((((((((((.((((...((((..((((..(((((....)).))).))))))))..)))))))))))).))..))))....)))). ( -53.20) >DroEre_CAF1 46612 120 - 1 GUUAGCAGGUUCGGGUGGCGUUCUUGCAGGACAAUGGCGGCGGCAUGGAACUUGGCCAGCAUUUCCAGGGUCAGCUUGGUGUGCGCCAUGUCCAGCUGCUUCACCCGGUCCGCAUUGACG (((((..((..((((((((((..(((.....)))..)))(((((.((((...((((..((((..(((((.....))))).))))))))..))))))))).)))))))..))...))))). ( -53.80) >DroYak_CAF1 46450 120 - 1 GUGAGCAGCUCCGGGUGGCGUUCCUGCAGGAUAAUGGAGGCGGCAUGGAACUUGGCCAGCAUUUCCAGAGUCAGCUUGGUGUGCGCCAGGUCCAGCUGCUUCACGCGAUCCGCAUUGACG ....((((...(((((.(((((((....))).....((((((((.((((.((((((..((((..(((.((....))))).)))))))))))))))))))))))))).)))))..))).). ( -52.60) >consensus GUUAGCAGGUUCGGAUGGCGUUCCUGCAGGACUAUGGAGGCGGCAUGGAACUUGGCCAGCAUUUCCAGAGUCAGCUUGGUGUGUGCCAUGUCCAGCUGCUUCACGCGGUCCGCAUUGACG ............((((.(((.(((....))).....((((((((.((((...((((..((((..((((.(....))))).))))))))..)))))))))))).))).))))......... (-39.22 = -39.54 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:50 2006