Locus 3449

Sequence ID 2L_DroMel_CAF1
Location 10,043,343 – 10,043,461
Length 118
Max. P 0.981228
window5457

overview

Window 7

Location 10,043,343 – 10,043,461
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.78
Mean single sequence MFE -26.02
Consensus MFE -24.10
Energy contribution -25.14
Covariance contribution 1.04
Combinations/Pair 1.02
Mean z-score -1.64
Structure conservation index 0.93
SVM decision value 1.88
SVM RNA-class probability 0.981228
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10043343 118 - 22407834
UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAAGGACUGACGUU
...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... ( -28.80)
>DroSec_CAF1 38981 119 - 1
UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUUGUGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGCAUUUAUUUUGCAGCCAAAGGACUGACGUU
...(((((.((((((((....))))).))).(((.(((((...))))).))).....)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... ( -31.80)
>DroSim_CAF1 41403 118 - 1
UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGUUUAAAAAUGAAUGCAUUUAUUUUGCAGCCAAAGGACUGACGUU
...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))...(((((((.((((....))))..((((.......))))......))))))).... ( -25.10)
>DroEre_CAF1 39023 118 - 1
UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCACUCUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCGUAAGGACUGACGUC
...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))......(..((((.(..((((((((....))))))))..).))))..)......... ( -23.30)
>DroYak_CAF1 39709 118 - 1
UAAUUAAAAGUGGCAAAAACUUUUCCACAGAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCACUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAGGGACUGACGUC
......(((((((...(((((((.....))))))-)((((...))))..................)))))))..((((.((((((((....))))))))..))))....(((....))) ( -21.10)
>consensus
UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU_UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAAGGACUGACGUU
...(((((.((((((((....))))).))).(((.(((((...))))).))).....)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... (-24.10 = -25.14 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:46 2006