| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,039,311 – 10,039,401 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 10,039,311 – 10,039,401 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -12.59 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10039311 90 + 22407834 CCCAUUGCCUGCAGCGCAUAAAUUCAAUUUGCCGAUGAGCGUGCACAAAAGUAUGCAACAAAAUGGCAACAACUCGAUACAGA-ACA--------CACU ....(((((..((..(((...........)))...)).((((((......))))))........)))))..............-...--------.... ( -15.80) >DroPse_CAF1 32080 99 + 1 CCCAAUGCCUGCAGCGCAUAAAUUCAAUUUGCCGAUGAGCGUGCACAAAAGUAUGCAACAAAAUGGCAACAGCUCGACACAGAUACAGAUACAGAUACU ....(((((....).)))).......(((((..(.(((((.((((........))))......((....))))))).).)))))............... ( -16.70) >DroWil_CAF1 64093 75 + 1 GCCAUUGCCUGCAGCGCAUAAAUUCAAUUUACCGUUGAGCAUGCACAAAAGUAUGCAACAAAAUGGCAACU------------------------CACA ((((((.....(((((..(((((...))))).))))).((((((......)))))).....))))))....------------------------.... ( -20.40) >DroMoj_CAF1 43845 84 + 1 ------GCCUGCAGCGCAUAAAUUCAAUUUGCCGUUGAGCAUGCACAGAAGUGUGCAACAAAACAGCAACAACUCGAACCAGC-ACA--------CACA ------((.(((((((((...........)).))))..))).))......((((((.........................))-)))--------)... ( -15.81) >DroAna_CAF1 37966 90 + 1 CACAUUGCCUGCAGCGCAUAAAUUCAAUUUGCCGAUGAGCGUGCACAAAAGUAUGCAACAAAAUGGCAACAACUCGAUACAGU-ACA--------CUUG ....(((((..((..(((...........)))...)).((((((......))))))........)))))..............-...--------.... ( -15.80) >DroPer_CAF1 32933 99 + 1 CCCAAUGCCUGCAGCGCAUAAAUUCAAUUUGCCGAUGAGCGUGCACAAAAGUAUGCAACAAAAUGGCAACAGCUCGACACAGAUACAGAUACAGAUACU ....(((((....).)))).......(((((..(.(((((.((((........))))......((....))))))).).)))))............... ( -16.70) >consensus CCCAUUGCCUGCAGCGCAUAAAUUCAAUUUGCCGAUGAGCGUGCACAAAAGUAUGCAACAAAAUGGCAACAACUCGACACAGA_ACA________CACU .....((((....(.(((...........)))).....((((((......))))))........))))............................... (-12.59 = -12.73 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:45 2006