Locus 3443

Sequence ID 2L_DroMel_CAF1
Location 10,015,430 – 10,015,525
Length 95
Max. P 0.952926
window5449

overview

Window 9

Location 10,015,430 – 10,015,525
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 76.14
Mean single sequence MFE -23.00
Consensus MFE -13.30
Energy contribution -12.88
Covariance contribution -0.42
Combinations/Pair 1.42
Mean z-score -2.30
Structure conservation index 0.58
SVM decision value 1.43
SVM RNA-class probability 0.952926
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10015430 95 + 22407834
UGUUUUUGCAUACGUAGGGUUUCUCUAAAAAUCUCGGGAAUUACUCCUUGAUCUGCUAGUUUUAGGGAUUUCUGCCCUUCGUGUUCGUGUUUUUU
.......(.(((((.(((((.((((((((((((..((((.....)))).))).......))))))))).....))))).))))).)......... ( -23.91)
>DroEre_CAF1 11507 95 + 1
GGCCUUGGAAUACGUGGAUUUUCCCUGUAAAUCUCUGGGAUUAAUCCUUGGUCUGCCAUUUUUGGCGAUUUCUCCUUUUCGUCUUUCACUUUUAU
.....(((((.(((.(((((.((((...........))))..)))))..((((.((((....)))))))).........))).)))))....... ( -22.60)
>DroYak_CAF1 11510 95 + 1
GGCUUUGGGAUACGUAGAUUUUCCCUAAAAAUCUCUGGGAUUCCUCUUUGGUCUGCUAUCUUUGGGGAAUUCUCCAUUUCGUGAUCCACUUUUAU
.....((((.((((.(((((((.....)))))))..((((((((((..(((....))).....))))))))))......)))).))))....... ( -22.50)
>consensus
GGCUUUGGAAUACGUAGAUUUUCCCUAAAAAUCUCUGGGAUUACUCCUUGGUCUGCUAUUUUUGGGGAUUUCUCCAUUUCGUGUUCCACUUUUAU
......((((((((.(((...((((((((((((...(((.....)))..))).......)))))))))..)))......))))))))........ (-13.30 = -12.88 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006