| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,013,670 – 10,013,777 |
| Length | 107 |
| Max. P | 0.622910 |
| Location | 10,013,670 – 10,013,777 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.85 |
| Mean single sequence MFE | -33.63 |
| Consensus MFE | -17.12 |
| Energy contribution | -18.63 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10013670 107 + 22407834 CAAAAGUGUUUCCUUUCGUGAGGAGAUCGCCAUCGAAGCAGAACUGCUUUGGUAAACCUUCCACUACUUGAUGGUAAUCUUCC-UGCGGUGGAGCAUCUUUGGUUUUC--------- ((((..((((((...((((..((((((..(((((((((((....))))))((........)).......)))))..)))))).-.)))).))))))..))))......--------- ( -39.00) >DroSec_CAF1 9567 107 + 1 CAAAAGUGUUUCCUAUGGUGAGGAGAUCGCCAUCGAAGGAGAACUGCUUUGGUAAACCUUCCACUACUUGAUGGUAAUCUUCC-UGUGGUGAAGCACCUUUGGUUUUC--------- ((((.(((((((((((((...((((((..((((((((((...(((.....)))...)))))........)))))..)))))))-))))).))))))).))))......--------- ( -36.90) >DroSim_CAF1 10196 107 + 1 CAAAAGUGUUUCCUUUGGUGAGGAGAUCGCCAUCGAAGGAGAACUGCUUUGGUAAACCUUCCACUACUUGUUGGUAAUCUUCC-UGUGGUGAGGCACCUUUGGUUUUC--------- ((((.((((((((((....)))))))).(((...(((((...(((.....)))...)))))((((((..(..((....))..)-.)))))).))))).))))......--------- ( -29.90) >DroEre_CAF1 9633 107 + 1 CGAAAGUGUUUCCUUUGGUGAGGAAAUCGCCAUCGAAGGAGAACUGCCUUGGUAAGCCUUCCACUACUUUAUGGCAAUAUUCC-UGCGACAGAGCACUUUCGUUUUUC--------- (((((((((((....((((((.....))))))(((.(((((.(.((((..((((..........))))....)))).).))))-).)))..)))))))))))......--------- ( -35.90) >DroYak_CAF1 9651 107 + 1 CGAAAGUGUUUCCUUGGGUGAGGAGAUCGCCAUCGAAGGUGAACUGCUUUGGUAGACCUUCCACUACUUGAUGGCAAUCUUCC-UGCGACCAAGCGUUUUUGGUUUUC--------- ((((((((....(((((.(((((((((.((((((((((((...((((....))))))))))........)))))).))).)))-).)).)))))))))))))......--------- ( -35.30) >DroAna_CAF1 9825 107 + 1 CAAAUGAGUUUCCGGCAGUAAGGUGGUCACUAUCAAAAGAGAACUGCUUUGGUAGACCCUCCACUACACGAUGGAAGUGCUCCCUCUGA----------AUGGUUUUCGCCCCCAGU .....(((((((((...((..(((((...((((((((..........)))))))).....)))))..))..)))))..))))...(((.----------..(((....)))..))). ( -24.80) >consensus CAAAAGUGUUUCCUUUGGUGAGGAGAUCGCCAUCGAAGGAGAACUGCUUUGGUAAACCUUCCACUACUUGAUGGUAAUCUUCC_UGCGAUGAAGCACCUUUGGUUUUC_________ ((((.((((((..........((((((.(((((((((((...(((.....)))...)))))........)))))).)))))).........)))))).))))............... (-17.12 = -18.63 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006