Locus 3441

Sequence ID 2L_DroMel_CAF1
Location 10,007,400 – 10,007,496
Length 96
Max. P 0.617835
window5447

overview

Window 7

Location 10,007,400 – 10,007,496
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -23.13
Consensus MFE -15.28
Energy contribution -15.28
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.48
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.617835
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10007400 96 - 22407834
CUUAGCCAGCAGCAUGGGUGAUUUCAUUGAAGUCAAAUCGAAAAUGUCUAUGAUGUCGUUCAGAGAGAUCGAGAACCGAUCAGCUGCAAAA----GCAAU--
....((..(((((.((..((((.((((.((..((.....)).....)).)))).))))..))....(((((.....))))).)))))....----))...-- ( -28.30)
>DroVir_CAF1 1844 101 - 1
CUUUGCUAGGAGCAGCGGCGAUUUCAUAGAAGUUAAGUCGAAUAUGUCUAUGAUAUCGUUCAACGAAAUAGAAAAUCGAUCAGCUGCAAGAAAUUA-GACGC
...........(((((((((((.(((((((.(((......)))...))))))).))))))...(((.........)))....))))).........-..... ( -23.70)
>DroPse_CAF1 2786 102 - 1
CUUAGCCAGCAGCAGUGGGGAUUUCAUUGAAGUCAAGUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUGUAAUGG
........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... ( -21.00)
>DroGri_CAF1 1628 101 - 1
UUUGGCCAGCAGCAUAGGUGAUUUCAUAGAAGUUAAAUCGAAUAUAUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGUAAGCAAAUC-ACUGG
....((..(((((.((..((((.(((((((.((..........)).))))))).))))..))......((......))....)))))..)).....-..... ( -21.40)
>DroWil_CAF1 3265 93 - 1
CUUGGCCAGCAGCAGCGGUGAUUUCAUAGAUGUUAAAUCGAAUAUAUCUAUGAUAUCGUUGAGAGAAAUGGAAAAGCGAUCAGCUGUAAUU------AA---
.....(((.(..((((((((...((((((((((..........))))))))))))))))))...)...)))...(((.....)))......------..--- ( -23.40)
>DroPer_CAF1 2729 102 - 1
CUUAGCCAGCAGCAGUGGGGAUUUCAUUGAAGUCAAGUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUGUAAUGG
........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... ( -21.00)
>consensus
CUUAGCCAGCAGCAGCGGUGAUUUCAUAGAAGUCAAAUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUG_AAUGG
........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... (-15.28 = -15.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:36 2006