Locus 3440

Sequence ID 2L_DroMel_CAF1
Location 10,000,206 – 10,000,315
Length 109
Max. P 0.682876
window5446

overview

Window 6

Location 10,000,206 – 10,000,315
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 78.26
Mean single sequence MFE -18.78
Consensus MFE -11.58
Energy contribution -12.62
Covariance contribution 1.04
Combinations/Pair 1.19
Mean z-score -1.74
Structure conservation index 0.62
SVM decision value 0.31
SVM RNA-class probability 0.682876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10000206 109 - 22407834
UCAUCAGGAGCACACUUAACUACUUCGUUAUCCGUACCUUUAACCGAAAAUUGUACUAACCAGUCGAAUAAUCGAACAGUAGUAUUUUCAAUGGAUAAAAUGGAACAAA
......((((............))))....(((((...((((.(((......((((((.....((((....))))....))))))......))).)))))))))..... ( -17.50)
>DroSec_CAF1 31375 109 - 1
UCAUCUGGAGCACACUUAACUCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA
...(((((((.........))))....((((((((.......)).((((((((((((......((((....))))..))))))))))))...))))))...)))..... ( -25.80)
>DroSim_CAF1 34401 89 - 1
--------------------UCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA
--------------------(((....((((((((.......)).((((((((((((......((((....))))..))))))))))))...))))))...)))..... ( -25.10)
>DroEre_CAF1 32141 109 - 1
GCACCAAGAACUAAUUUUACGCCUCCAUCGCCCGCACCUUUAAAUGAAAAUAUUAGCAACCAAUCGAACAAUCGAGCAGUAUUUUUUUCAAUGGAUAAAAUGGAACAGA
.......................(((((.(....).((.......(((((((((.((......((((....)))))))))))))))......)).....)))))..... ( -12.82)
>DroYak_CAF1 32207 109 - 1
GCAUCAAGAACUCAUUUAACGCCUUCAUCAUCCGCACCUUUAAAAGAAAAUGUUACCAACCAAUCGGGAAAUCGAGCAGUAUCAUUUUCAAUGGAUAAAAUGGAACAGA
...........((((((...((...........))..........(((((((.(((.......((((....))))...))).)))))))........))))))...... ( -12.70)
>consensus
GCAUCAAGAACACACUUAACUCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA
.......................((((((((((((..........(((((((.((((......((((....))))..)))).))))))).)))))))..)))))..... (-11.58 = -12.62 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:35 2006