| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,044,611 – 1,044,712 |
| Length | 101 |
| Max. P | 0.670408 |
| Location | 1,044,611 – 1,044,712 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.35 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -14.95 |
| Energy contribution | -16.22 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1044611 101 + 22407834 ----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGUGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.((((.---((((((((((((................)))))))))).))...)))).))))...))))))........ ( -28.29) >DroSec_CAF1 26756 101 + 1 ----ACCAACUCUAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.(((((---(.((((((((...((((..........)))).)))))))).)).)))).))))...))))))........ ( -26.70) >DroSim_CAF1 18559 101 + 1 ----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCGGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.((((.---(.((((((((...((((..........)))).)))))))).)..)))).))))...))))))........ ( -25.90) >DroEre_CAF1 23997 96 + 1 ----ACCAACCCGAACG-----------------CCACUCUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGCAGAGUGCCUGAGGUCAGGUUAUCGUGAAGCUAACUA ----............(-----------------((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))..))...... ( -20.70) >DroYak_CAF1 26071 113 + 1 ----GCCAACCCGAACCCACACCCACGUCCACACCCACUUUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----.............................(((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ ( -27.80) >DroAna_CAF1 32857 92 + 1 AGCCGCCCACUUUUUCUCGCC------------CCC-----AACCUGGGCGCCAGCCCUUCAUUCAUUAUAAUUCGCACUGACGA--AUGGGUGAAGUCAG---------GGCCUAACCC .(.((((((............------------...-----....)))))).).(((((...((((((...(((((......)))--)).))))))...))---------)))....... ( -27.71) >consensus ____ACCAACUCGAACCCACG____________CCCACUCUAAUCUA___GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA .................................(((((..((((((....(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ (-14.95 = -16.22 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:31 2006