Locus 3432

Sequence ID 2L_DroMel_CAF1
Location 9,969,825 – 9,969,923
Length 98
Max. P 0.564916
window5436

overview

Window 6

Location 9,969,825 – 9,969,923
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 85.21
Mean single sequence MFE -45.72
Consensus MFE -29.48
Energy contribution -30.28
Covariance contribution 0.80
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.64
SVM decision value 0.06
SVM RNA-class probability 0.564916
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9969825 98 + 22407834
CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGAUGCUCCUGUCUCGCAUCCG-------GGGGGCAGUGGCUCGGCACAAGCGUUAAACA
.(((((.((((((.(((...))).)))((((((((((((...(((((((((.........)))))))-------))))))))))))))..))).)))))...... ( -45.10)
>DroSec_CAF1 8083 104 + 1
CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCGUGGGGAAG-GGGCAGUGGCUCGGCUCAAGCGGCAAACA
..((((((((.(....).))))(((.(((((((((((((.(((((((((((.........))))))).))))...-))))))))))))).)))....)))).... ( -48.60)
>DroSim_CAF1 10261 105 + 1
CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCGUGGUGAGGGGGGCAGUGGCUCGGCUCAAGCGGCAAACA
..((((((((.(....).))))(((.(((((((((((((.(((((((((((.........)))))))....)))).))))))))))))).)))....)))).... ( -49.80)
>DroEre_CAF1 8819 92 + 1
CAUGCUGGUGGCUAUGGCUACCGGGGUGGGUUACUGGCUGCUUCCGGGUGCUCCUGGCUCAGAUUCG-------G-GGGCAGUGGCU-----CAGGCGGCACACA
(((.((((((((....)))))))).)))........(((((((.(.(.(((((((((.......)))-------)-))))).).)..-----.)))))))..... ( -41.90)
>DroYak_CAF1 8847 92 + 1
CAUGCUGGUGGCCAUGGCUACCGGGGUGGGUUACUGGCUGCUUCCGGGUGCUUCUGGCUGAGAUUCG-------G-GGGCAGUGGCU-----CAUGCGGCAAACA
..((((((((((....)))))).(.(((((((....(((((((((((((.(((......))))))))-------)-)))))))))))-----))).))))).... ( -43.20)
>consensus
CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCG_______G_GGGCAGUGGCUCGGC_CAAGCGGCAAACA
(((.((((((.(....).)))))).)))(((((((((((.(...(((((((.........))))))).......).))))))))))).................. (-29.48 = -30.28 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:25 2006