| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,963,157 – 9,963,277 |
| Length | 120 |
| Max. P | 0.626414 |
| Location | 9,963,157 – 9,963,277 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -34.37 |
| Consensus MFE | -19.41 |
| Energy contribution | -19.69 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9963157 120 - 22407834 ACUCCGUGAAGGAUGGCUUCCAGCGCAAUGACCAGCUCAUUCUCAUCGGCGGUCUGUUUGUGUUGUCCGCAGUGCCCGUGUCCAUUUGGCAUAUCAUCCAACACGUCAUUCAUUUUACCA ....((((..(((((((...((((((((.((((.(((.((....)).)))))))...))))))))...)).(((((...........)))))..)))))..))))............... ( -36.80) >DroVir_CAF1 2246 120 - 1 ACUCGGUGAAGGAUGGCUUCCAACAAAAUGACCAGCUUAUUCUCAUCGGCGGUCUGUUCGUUCUAUCCGCGGUGCCCAUUUCCAUUUGGCACAUCAUACAACACGUCAUACAUUUCACAA .....(((((((((((...(.((((....((((.(((.((....)).))))))))))).)..))))))...(((((...........))))).....................))))).. ( -28.20) >DroGri_CAF1 2266 120 - 1 ACUCGGUGAAAGAUGGCUUCAAGCAGAACGAUCAACUCAUUCUGAUUGGGGGCCUCUUUGUGCUCUCCGCCGUGCCCAUUUCCAUUUGGCAUAUCAUCCAGCAUGUUAUCCAUUUCACAA .....((((((((.((((((...(((((.((.....)).)))))....))))))))...(((((.......(((((...........))))).......)))))........)))))).. ( -31.64) >DroWil_CAF1 2119 120 - 1 ACUCGGUGAAGGAUGGCUUUCAACGUAAAGAUCAAUUGAUAUUGAUUGGCGGGCUGUUUGUGCUCGCCGCUGUGCCCAUAUCCAUUUGGCACAUCAUUCAACACGUCAUCCAUUUCACAA .....((((((((((((............(((((((....)))))))(((((((.......)))))))(.((((((...........)))))).).........)))))))..))))).. ( -42.10) >DroMoj_CAF1 2289 115 - 1 ACUCGGUGAAG-AU-GCUUC-AGCA-GACGAUCA-CUUAUACUUAUCGGCGGACUCUUCGUGCUCUCCGCCGUGCCCAUUUCCAUUUGGCAUAUCAUACAACACGUCAUCCAUUUCACAA .....((((((-.(-((...-.)))-((((....-............((((((............))))))(((((...........)))))...........)))).....)))))).. ( -29.20) >DroAna_CAF1 2105 120 - 1 ACUCCGUGAAGGAUGGUUUCCAACGCAACGAUCAGCUCAUCCUCAUCGGCGGAUUGUUCGUUCUGUCGGCGGUGCCAGUGUCGAUAUGGCACAUCAUCCAACACGUCAUCCAUUUCACGA ....((((((((((((.....((((.(((((((.(((.((....)).))).))))))))))).(((.((..((((((.........)))))).....)).)))..))))))..)))))). ( -38.30) >consensus ACUCGGUGAAGGAUGGCUUCCAACACAACGAUCAGCUCAUUCUCAUCGGCGGACUGUUCGUGCUCUCCGCCGUGCCCAUUUCCAUUUGGCACAUCAUCCAACACGUCAUCCAUUUCACAA .....((((((((((((...............................((((..............)))).(((((...........)))))............)))))))..))))).. (-19.41 = -19.69 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006