Locus 343

Sequence ID 2L_DroMel_CAF1
Location 1,041,080 – 1,041,184
Length 104
Max. P 0.596856
window544

overview

Window 4

Location 1,041,080 – 1,041,184
Length 104
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 82.75
Mean single sequence MFE -26.35
Consensus MFE -15.82
Energy contribution -16.32
Covariance contribution 0.50
Combinations/Pair 1.22
Mean z-score -1.93
Structure conservation index 0.60
SVM decision value 0.13
SVM RNA-class probability 0.596856
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1041080 104 - 22407834
GCAAUUGAACAGUUGAUACAGUCAGAUACACUAGAACUGGAAAUGAAUUCCAUUUCCUAUCAUUUAACUAAUCUGAUGUAUAAACGU----------UUUGAGUUUUUGGCUCA
......((((.(((.(((((.((((((....((((...(((((((.....))))))).....))))....))))))))))).)))))----------))(((((.....))))) ( -24.90)
>DroSec_CAF1 23337 114 - 1
GCAAUUGAACAGUUGAUACAGGCAGAUACACUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCACUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA
((..(((((..(((.(((((..(((((...........(((((((.....)))))))((.....))....))))).))))).)))..)))))((((...........)))))). ( -29.80)
>DroSim_CAF1 15099 114 - 1
GCAAUAGAACAGUUGAUACAGUCAGAUACAGUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCAUUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA
((....(((..(((.(((((.((((((...((.((((.(((((((.....)))))))....)))).))..))))))))))).)))..)))..((((...........)))))). ( -30.10)
>DroYak_CAF1 22591 114 - 1
ACAAUUGAACAGUUGAUACAGUCGGAAGCAACAGAAUUGGGAAUAAAUUCCAUUUCUAAUCAUUUGCCUAAUCUAAUGACCAAUCGUUUUGAGCCAUUCUGAGUAUUUGGCGCA
.(((((....))))).....((((((.((...((((.(((((.....))))).))))..(((..((.((.....(((((....)))))...)).))...))))).))))))... ( -20.60)
>consensus
GCAAUUGAACAGUUGAUACAGUCAGAUACACUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCAUUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA
.(((((....))))).....((((((.((..((((((.(((((((.....)))))))(((((..(.....)..))))).................)))))).)).))))))... (-15.82 = -16.32 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006