Locus 3428

Sequence ID 2L_DroMel_CAF1
Location 9,950,570 – 9,950,665
Length 95
Max. P 0.901219
window5431

overview

Window 1

Location 9,950,570 – 9,950,665
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 86.59
Mean single sequence MFE -34.43
Consensus MFE -31.09
Energy contribution -31.07
Covariance contribution -0.02
Combinations/Pair 1.27
Mean z-score -1.83
Structure conservation index 0.90
SVM decision value 1.02
SVM RNA-class probability 0.901219
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9950570 95 - 22407834
ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUUCAGUGACCAAGUGCUGAUUC
.....((((((((((((((.((((((((((..(((((....))))))))))))))).......((....))...)))))).)).))).))).... ( -38.60)
>DroSec_CAF1 15221 95 - 1
ACCUAUAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAAUGACCAAGUGUUGAUUC
.......(((((..(((...((((((((((..(((((....)))))))))))))))..)))..)))))..((((.....))))............ ( -32.90)
>DroSim_CAF1 15674 95 - 1
ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCGGGAAAAGUUGCGGUCCCGGUUCCAGUGACCAAGUGCUGAUUC
.....(((((((((((((..((((((((((..(((((....))))))))))))))).......((....))....))))).)).))).))).... ( -36.70)
>DroEre_CAF1 15948 94 - 1
ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGG-CACUCGCUGUUUC
.......((((((.((((((((((((((((..(((((....))))))))))))))...)))..)))).)))))).(((((.-....))))).... ( -36.20)
>DroYak_CAF1 15519 94 - 1
ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGC-CACACGCAGUUCC
..........((((((((..((((((((((..(((((....))))))))))))))).......((....))....))))))-))........... ( -36.40)
>DroAna_CAF1 15384 88 - 1
ACCUACAAGCUGUC-CCGAGUUUUGGCCAUCAGUUCGAGUCCGAGCGUGGUCAGGAAAAGUUGCGGUUACGGU---AAUACCCAAA---AUAUUU
(((....((((((.-.(...((((((((((..(((((....)))))))))))))))...)..))))))..)))---..........---...... ( -25.80)
>consensus
ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGACCAAGUGCUGAUUC
.......((((((.((((..((((((((((..(((((....))))))))))))))).......)))).)))))).(((((......))))).... (-31.09 = -31.07 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:20 2006