Locus 3425

Sequence ID 2L_DroMel_CAF1
Location 9,937,546 – 9,937,650
Length 104
Max. P 0.755030
window5425

overview

Window 5

Location 9,937,546 – 9,937,650
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 82.05
Mean single sequence MFE -26.09
Consensus MFE -21.73
Energy contribution -21.96
Covariance contribution 0.23
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.83
SVM decision value 0.49
SVM RNA-class probability 0.755030
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9937546 104 - 22407834
GAUAGUGUCCAUAGUCUGUCAUCUUGAGCACUCCAUGGGUACGCAUUCCAUACACGCAUUUUUCCGGGAUGGACACUCAUGCUGCGCUUAUGAUACAACUGUUU
..........(((((.(((.(((.(((((.(..(((((((...((((((................))))))...)))))))..).))))).))))))))))).. ( -27.99)
>DroSec_CAF1 2269 104 - 1
GAUAGUGUCUAUAGUGUGUCAUCUUGAGCACUCCAUGAGUACGCAUUCCAUACAUAAAAUUUUCCGGGAUUAACACUCAUGCUGCGCUUAUGAUACAACUGUUU
..........((((((((((((...((((.(..(((((((....(((((................)))))....)))))))..).))))))))))).))))).. ( -27.69)
>DroEre_CAF1 2974 97 - 1
GA----AUUCAUAGUGUGCUAUCUUGAGCA-UCCAUAAGUACGCAUUCCAUACAGGCCUCUUUCCGGGAUAA--UCUCAUGCAGCGCUUAUGGUACAGCUGUUU
..----....((((((((((......))))-)(((((((..(((((........((.......))(((....--.))))))).)..)))))))....))))).. ( -22.60)
>consensus
GAUAGUGUCCAUAGUGUGUCAUCUUGAGCACUCCAUGAGUACGCAUUCCAUACACGCAUUUUUCCGGGAUAAACACUCAUGCUGCGCUUAUGAUACAACUGUUU
..........((((((((((((...((((.(..(((((((....(((((................)))))....)))))))..).))))))))))).))))).. (-21.73 = -21.96 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:14 2006