| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,920,808 – 9,920,898 |
| Length | 90 |
| Max. P | 0.988502 |
| Location | 9,920,808 – 9,920,898 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -21.06 |
| Energy contribution | -21.67 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.72 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9920808 90 + 22407834 CUUA---UCUCUUCUAAUGUAGAU------A---UGUAUUAAUUUAUAAUCUAUCAGGGCCACGCCCCCGCUGGCGGUUGCCUGCUGGCCACUGCCUGUGAG ....---...........((((((------.---((((......))))))))))..((((...)))).(((.((((((.(((....))).)))))).))).. ( -29.20) >DroPse_CAF1 19630 90 + 1 GUAGAUA------------UGGUUACCGAUGCGUUUUAUUAUAAGAUAAUAUCACAGGGCCACGCCCCAGCAGGAGGAUGUCUUCUGGCCACAGCCUGCGAG ((((.(.------------(((((.....(((((..((((((...))))))..)).((((...))))..)))(((((....)))))))))).)..))))... ( -23.30) >DroSec_CAF1 17129 96 + 1 CGUA---UCUCUUUGAUUGUAGAUAAUUAUA---UGUAUUAAUUCAUAAUCUAUCAGGGCCACGCCCCAGCUGGCGGUUGCCUGCUGGCCACUGCCUGUGAG ....---.(((...((((((..(((((....---...))).))..)))))).....((((...))))..((.((((((.(((....))).)))))).))))) ( -26.60) >DroSim_CAF1 17132 96 + 1 CUUA---UCUCUUUGAUUGUAGAUAAUUAUA---UGUAUUAAUUCAUAAUCUAUAAGGGCCACGCCCCCGCUGGCGGUUGCCUGCUGGCCACUGCCUGUGAG ....---.........((((((((.....((---((........))))))))))))((((...)))).(((.((((((.(((....))).)))))).))).. ( -30.80) >DroEre_CAF1 17067 96 + 1 CUUA---UCUGUUAGCGUGUAUAUAAUUAAA---UGUGCUAAUUCAUAAUCUUUCAGGGGCAUGCCCCCGCUGGCGGUUGCCUUCUGGCCACUGCCUGCGAG .(((---(..(((((((..(.((....)).)---..)))))))..)))).......((((....))))(((.((((((.(((....))).)))))).))).. ( -38.20) >DroYak_CAF1 17288 95 + 1 CUUA---UCUUUUAGAAU-UAUGUAAUUAAA---UGUACUAUUUCAUAAACUCUCAGGGCCACGCCCCCGCUGGCGGUUGCCUUCUGGCCACUGCCUGCGAG ....---.......(((.-((.(((......---..))))).))).......(((.((((...))))..((.((((((.(((....))).)))))).))))) ( -28.50) >consensus CUUA___UCUCUUAGAAUGUAGAUAAUUAUA___UGUAUUAAUUCAUAAUCUAUCAGGGCCACGCCCCCGCUGGCGGUUGCCUGCUGGCCACUGCCUGCGAG ........................................................((((...)))).(((.((((((.(((....))).)))))).))).. (-21.06 = -21.67 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:12 2006