Locus 3415

Sequence ID 2L_DroMel_CAF1
Location 9,883,775 – 9,883,895
Length 120
Max. P 0.544948
window5405

overview

Window 5

Location 9,883,775 – 9,883,895
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.00
Mean single sequence MFE -26.02
Consensus MFE -24.04
Energy contribution -23.84
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.08
Structure conservation index 0.92
SVM decision value 0.02
SVM RNA-class probability 0.544948
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9883775 120 + 22407834
AAGGCGAUUACGUUAAUAUGCCAUGGGCGUCUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUUGAGUUAUUAGCUCAUCACUUGGGCGAAUAAACAUUGACUGC
..((((((((...)))).))))....(((((.....................((((((((((((........))))).)))))))...(((((.....)))))...........))).)) ( -21.40)
>DroSec_CAF1 91678 120 + 1
AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU
......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))((((...)))) ( -26.70)
>DroSim_CAF1 98534 120 + 1
AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU
......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))((((...)))) ( -26.70)
>DroEre_CAF1 96603 120 + 1
AAGGCGAUUACGUUAAUAUGCCACGGGCGUAUAAUAAAAAAGGUUAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUGGACAGUGACUAU
..((((....)))).(((((((...))))))).........((((((........(((((((((........)))))))))(((....(((((.....))))).....))).)))))).. ( -29.00)
>DroYak_CAF1 96099 120 + 1
AAGGCGAUUACGUUAAUAUGCCAUGGGCGUGUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGGAGUUAUUAGCUCAACACUUGGGCAAAUAGGCAGUGACUUU
...((.(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))))......... ( -26.30)
>consensus
AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU
......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))........... (-24.04 = -23.84 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:56 2006