Locus 3412

Sequence ID 2L_DroMel_CAF1
Location 9,881,427 – 9,881,547
Length 120
Max. P 0.929391
window5400

overview

Window 0

Location 9,881,427 – 9,881,547
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -26.84
Consensus MFE -23.84
Energy contribution -24.00
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.89
SVM decision value 1.20
SVM RNA-class probability 0.929391
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9881427 120 - 22407834
UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUAUCAAGUUACUUAUUAAAUUUCAUUGAGCUUGCAGUUGUAUUGUAGUUAAACUUCUCUGACGUGAGUGUAAGAAAAGUUAAUAAA
((((((((....(((((.(((((((..(((((((((......)))).......)))))...))).)))).))))).))))))))(((((.(((.((....))...))).)))))...... ( -29.21)
>DroSec_CAF1 89358 120 - 1
UAAUUACAUUUUUACGAAUCCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUAGAGUGCAAGUAAAGUUAAUAAA
((((((((....(((((.(((((((.((((((......(((...)))......))))).).))).)))).))))).))))))))(((((..((.((......)).))..)))))...... ( -28.60)
>DroSim_CAF1 96222 120 - 1
UAAUUACAUUUUUACGAAUCCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUAGAGUGCAAGUAAAGUUAAUAAA
((((((((....(((((.(((((((.((((((......(((...)))......))))).).))).)))).))))).))))))))(((((..((.((......)).))..)))))...... ( -28.60)
>DroEre_CAF1 94301 120 - 1
UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUCUCAAGUUACUUAUUUAAUUUCAUGGAGCUCGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUUGAGUGCAAGAAAAGUUAAUAAA
((((((((....(((((.((.((((.((((((......(((...)))......))))).).))))))...))))).))))))))(((((.(((.((......)).))).)))))...... ( -25.80)
>DroYak_CAF1 93802 120 - 1
UAAUUACAUUUUUACGAAUGCAGCUGCUGGAAAAUCUCAAGUUACUUAUUAUAUUUCAUGGAGCUCGGAGUUGUAUUGUAGUUGAGCUUCUCUGGUUUGAGGGAGAGAAAAGUUAAUAAA
((((((((....(((((.((.((((.((((((.((...(((...)))...)).))))).).))))))...))))).))))))))(((((((((..........)))))..))))...... ( -22.00)
>consensus
UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUUGAGUGCAAGAAAAGUUAAUAAA
((((((((....(((((.(((((((.((((((......(((...)))......))))).).)))).))).))))).))))))))(((((.(((.((......)).))).)))))...... (-23.84 = -24.00 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:51 2006