Locus 341

Sequence ID 2L_DroMel_CAF1
Location 1,035,412 – 1,035,523
Length 111
Max. P 0.512522
window542

overview

Window 2

Location 1,035,412 – 1,035,523
Length 111
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 87.48
Mean single sequence MFE -25.26
Consensus MFE -18.31
Energy contribution -17.43
Covariance contribution -0.88
Combinations/Pair 1.20
Mean z-score -1.58
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.512522
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1035412 111 + 22407834
AUAGAAUUAAGCCAAAUAAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAGAGGAGACUCUCGAGCAGGCACAAUA--------UGAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA
..(((.((..(((((....((.((..((.((((((.....)))).))..))((((....)))).)))).((((.....--------....)))))))))..)).)))............ ( -25.30)
>DroSec_CAF1 17591 111 + 1
AGAGAAUUAAGCCAAGCCAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA--------UAAAUGCCUUGGCCAACAUCUCAAUUACGGAAA
.((((.....(((((....((.((.....((((((.....)))).))((((...(....))))))))).((((.....--------....))))))))).....))))........... ( -26.70)
>DroSim_CAF1 9310 111 + 1
AGAGAAUUAAGCCAAGCCAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA--------UAAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA
.((((.((..(((((....((.((.....((((((.....)))).))((((...(....))))))))).((((.....--------....)))))))))..)).))))........... ( -26.90)
>DroEre_CAF1 15158 110 + 1
AUAGAAUUAAGCCAAAGAGGCAUCAAUCAGCGAUGAAAUUCAUUAGCAGG-AAAGGGGACCCUUCAGCAGACACAAUA--------UAAAUGUCUUGGCCAAGAUCUCAAUUACGGAAA
..(((.((..(((((.(((.((((.......))))...)))....((..(-((.((....))))).)).((((.....--------....)))))))))..)).)))............ ( -19.00)
>DroYak_CAF1 16981 119 + 1
AUGGAAUUAGGCCAAAGAAGCAUCAAUCAGCGAUGAAAUUCAUUAGCGGCUAAAGGGGACUCUUGUGCAGACACAAUAUGCAUACAUAAAUGUCUUGGCCAAGAUCUCAAUUACGGCAA
.(((.......)))..(((.((((.......))))...)))....((.(.(((..((((.(((((.(((((((...((((....))))..)))))..)))))))))))..)))).)).. ( -28.40)
>consensus
AUAGAAUUAAGCCAAACAAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA________UAAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA
..(((.....(((((....((........((((((.....)))).))(((...((....)))))..)).((((.................))))))))).....)))............ (-18.31 = -17.43 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:28 2006