| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,854,145 – 9,854,236 |
| Length | 91 |
| Max. P | 0.598161 |
| Location | 9,854,145 – 9,854,236 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 73.61 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.28 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9854145 91 + 22407834 AUACAUAUAUAUAUGUGUAUGUACGUGUGUAUAAAUAAAACGGUGGCAAGAUGUGAAGA-AUUUUUUAAAGCAUUCUUGCGACCUUAGUGCC--- .(((.((((((((((((....))))))))))))........(((.(((((((((.((((-...))))...))).)))))).)))...)))..--- ( -26.20) >DroPse_CAF1 66199 76 + 1 -------------CGAACACACA------AAAAAAAAACACGGUGGCAAGAUGUGAGGAGAUUUUUUAAAGCUUUCUUGCGACCUUCCUGACCCC -------------..........------............(((.((((((.((...(((....)))...))..)))))).)))........... ( -14.80) >DroEre_CAF1 66772 80 + 1 AG-----------AAUAUAUAUACGUGUGUAUAAAUAAAACGGUGGCAAGAUGUGAAGA-AUUUUUUAAAGCGUUUUUUCGACCUUAGUGCC--- ..-----------..(((((((....)))))))........(((((.(((((((.((((-...))))...))))))).)).)))........--- ( -10.90) >DroYak_CAF1 65705 78 + 1 -------------UUUAUAUAUACGUGUGUAUAAAUAAAACGGUGGCAAGAUGUGAAGA-AUUUUUUAAAGCGUUUUUGCGACCUUAGUGUC--- -------------(((((((((....)))))))))......(((.(((((((((.((((-...))))...))).)))))).)))........--- ( -16.80) >consensus _____________UGUAUAUAUACGUGUGUAUAAAUAAAACGGUGGCAAGAUGUGAAGA_AUUUUUUAAAGCGUUCUUGCGACCUUAGUGCC___ .........................................(((.(((((((((.((((....))))...))).)))))).)))........... (-12.34 = -12.28 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:42 2006