Locus 3405

Sequence ID 2L_DroMel_CAF1
Location 9,849,633 – 9,849,723
Length 90
Max. P 0.619927
window5390

overview

Window 0

Location 9,849,633 – 9,849,723
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.97
Mean single sequence MFE -30.68
Consensus MFE -24.78
Energy contribution -26.03
Covariance contribution 1.25
Combinations/Pair 1.07
Mean z-score -2.20
Structure conservation index 0.81
SVM decision value 0.18
SVM RNA-class probability 0.619927
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9849633 90 - 22407834
AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAUCUAAACA--UGCACAUCCUCGCA--CCGC
..((.((((((((((((((.(((.......)))..)))))))...................((((......)--)))))))))).)).--.... ( -30.30)
>DroSec_CAF1 58329 90 - 1
AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGUACAUCCUCGCA--CCGC
..((.(((((((((..((((((((.......(((....))).(((..(.....)..)))))))))))...))--...))))))).)).--.... ( -31.10)
>DroSim_CAF1 64435 90 - 1
AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCCUCGCA--CCGC
..((.(((((((.((.((((((((.......(((....))).(((..(.....)..))))))))))).....--.))))))))).)).--.... ( -32.50)
>DroEre_CAF1 60860 90 - 1
GGGCUACGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGCUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCCUCGCA--CCGC
(((((((((.(((((((((.(((.......)))..))))))))))))))......(((((.(((........--))).)))..)))).--)).. ( -30.80)
>DroYak_CAF1 61252 90 - 1
GGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUGGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCUUCGCA--CCGC
((((.(((((((.((.((((((((.((((((((.((....)))))))........))).)))))))).....--.))))))))).)).--)).. ( -32.80)
>DroAna_CAF1 64776 94 - 1
CGGCAAGGAUGUUGCCGGCUGCUCCUUCCCAGCCUCCUGGCAGUUUGCAUUUAAUGAAUGAGCAGCUAAACACAUACACAGACACGCAAACAGC
((((((.....))))))(((((((.(((...(((....))).(....).......))).)))))))............................ ( -26.60)
>consensus
AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA__UGCACAUCCUCGCA__CCGC
..((.(((((((.((.((((((((.......(((....))).((((((.....))))))))))))))........))))))))).))....... (-24.78 = -26.03 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006