Locus 3403

Sequence ID 2L_DroMel_CAF1
Location 9,846,404 – 9,846,499
Length 95
Max. P 0.667236
window5386

overview

Window 6

Location 9,846,404 – 9,846,499
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 84.39
Mean single sequence MFE -27.37
Consensus MFE -20.03
Energy contribution -21.20
Covariance contribution 1.17
Combinations/Pair 1.14
Mean z-score -2.33
Structure conservation index 0.73
SVM decision value 0.28
SVM RNA-class probability 0.667236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9846404 95 - 22407834
-GCAGGAGUU---GGUGGUGGGAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAACGUUGACAAGACAUUUUAUUGCACACAGAGAUACG
-.........---.(((.((..(((((((((.....)))).))))).))..(((.((.((((((.(((.....))).)))))).)).))).....))). ( -21.90)
>DroPse_CAF1 58253 81 - 1
-GCAGGAG--------GGUUGGAGGCC-------ACACAGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGUACUCUCC--CUCG
-....(((--------(((((...(((-------.......)))...)))...((((.((((((((((.....))))))))))...)))).))--))). ( -27.20)
>DroSec_CAF1 55082 98 - 1
-GCAGGAGGCGGAGGUGGUGGGAUGUCCUGCGAGAAGCGGACGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG
-((.....))....((((((.(.(((((.((.....)))))))).)))...(((.((.((((((((((.....)))))))))).)).))).....))). ( -28.20)
>DroSim_CAF1 58172 98 - 1
-GCAGGAGGCGGAGGUGGUGGCAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGCGACACG
-((.....))....(((.(.(((((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).)).)))). ( -31.40)
>DroEre_CAF1 57708 89 - 1
-GCAGGA---------GGUGGGAUGUCCUGCGAGAAGCAGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACGGAGACACG
-......---------.(((..(((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).....))). ( -28.40)
>DroYak_CAF1 57984 90 - 1
UGCAGGA---------GGUGGGAUGUCCUGCGAGAGGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG
.......---------.(((..(((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).....))). ( -27.10)
>consensus
_GCAGGAG________GGUGGGAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG
.................((((.(((((((((.....)))).))))).)...(((.((.((((((((((.....)))))))))).)).))).....))). (-20.03 = -21.20 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:38 2006