| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,844,827 – 9,844,933 |
| Length | 106 |
| Max. P | 0.754018 |
| Location | 9,844,827 – 9,844,933 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.40 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -20.21 |
| Energy contribution | -20.10 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9844827 106 + 22407834 UCUUAAGUGCCUAGGGCGGCAGCUUCGUUGUCGACACUUUGAUGGCACUCGACUGCCAAGGGCUUCAGCCC-CCCCUC--CUCCCCUCACAGAGACAAACACACACACA----- ......(((...((((.(((((..(((.(((((.(.....).)))))..))))))))..((((....))))-.)))).--(((........))).....))).......----- ( -30.40) >DroPse_CAF1 56742 96 + 1 UCUUAAGUGCCUUGGGCGGCAGCUUCGUUGUCGACACUUUGAUGGCACUCGACUGCCAAGGGCUCAAGCAC--AC-----------ACACAGACACGAGCGCGCACACU----- ......((((.(((((((((((..(((.(((((.(.....).)))))..))))))))....))))))))))--..-----------.......................----- ( -27.20) >DroSec_CAF1 53466 98 + 1 UCUUAAGUGCCUCAGGCGGCAGCUUCGUUGUCGACACUUUGAUGGCACUCGACUGCCAAGGGCUUCAGCCC---CAUC--CUCAUCUCCAAGAAACACACACA----------- ((((.((((((((((((((((((...)))))))....))))).))))))..........((((....))))---....--.........))))..........----------- ( -27.40) >DroSim_CAF1 56548 110 + 1 UCUUAAGUGCCUCGGGCGGCAGCUUCGUUGUCGACACUUUGAUAGCACUCGACUGCCAAGGGCUUCAGCCC--CCCUC--CUCCCCUCCCAGAAACACACACACACACACAUGC ......(((..(((((.((((((...((((((((....))))))))....).)))))..((((....))))--.....--.......))).))..)))................ ( -30.10) >DroYak_CAF1 56324 93 + 1 UCUUAAGUGCCUCGGGCGGCUGCUUCGUCGUCGACACUUUGAUGGCACUCGUCUGCCAAGGGCUUCAGCCC--CCCUCCCCGCUCCUCCCAGAGA------------------- ..........((((((.((..((...((((((((....)))))))).............((((....))))--........)).)).))).))).------------------- ( -28.80) >DroAna_CAF1 60189 97 + 1 UCUUAAGUGCCUCGGGCGUCAGCUUCGUUGUCGACACUUUGAUGGCACUCGACUGCCAAGGGCUCCCGGACACCCAUC--CACCUCGCAUACAUAGUCA--------------- .....(((((((((((.(((.((......)).))).).)))).)))))).(((((....((....))(((......))--)............))))).--------------- ( -27.20) >consensus UCUUAAGUGCCUCGGGCGGCAGCUUCGUUGUCGACACUUUGAUGGCACUCGACUGCCAAGGGCUUCAGCCC__CCCUC__CUCCCCUCACAGAAACACACACA___________ ........((((..(((((..(....((((((((....))))))))...)..)))))..))))................................................... (-20.21 = -20.10 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:35 2006